Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0393 ATGGAAACTCGGAGCCGGAAGCGGGCGGAGGCTTCCTCAGCTGCCCCTTCATCTTCCTCCTCTGGTCCCACCACCCGTTCCAGTAAGCGCACGCGTCTTTCTTCTTCTTCTTCCGCCCCCGCCACCACCGCTCCTCCTCCTCCACCTCCTCCTCCTCCTCCTTCTGTCAACACTCGTTCACGTGCATCCAGGACTAAGGAACCCTTGCCGCCTAAAAATCCTCCTCCCATGGACCCTGCCAATGAATCCTCCGGCTCGCGCCGCGATCGCCGCGGCAAGGACAATTCCGACAAGGGCAAGGAGAAGGAGCACGATGTTAGGATTAGGGATAGGGATGCAGAGAGGGGGCTGGCGCTTAATGTGGACGGCGGCGGCATTGGAGACGAAGATGATAACGACAGCGAGGGCGGTGTCGGGATGTTGCACCAGAATTTGACGTCGGCGAGCAGTGCACTTCAGGGGCTTCTTCGGAAACTTGGTGCGGGTTTGGATGATCTGCTTCCGTCCCCGGCGATGGGTTCTGCTTCTTCGTCTCATCAGAGCGGGAGGCTGAAGAAAATCCTGTTCGGGCTGCGGGCCGATGGGGAAGAAGGGCGGCAGGTTGAAGCGTTAACGCAGCTCTGTGAAATGCTTTCGATTGGGACCGAGGACTCGCTTAGTACGTTCTCTGTTGATTCTTTCGTTCCGGTGCTCGTGGGGTTGCTGAATCACGAGAGCAATCCTGATATTATGCTCCTTGCGGCCAGGGCATTAACTCATCTCTGCGATGTGCTCCCTTCGTCTTGTGCTGCTGTTGTGCATTACAATGCAGTGCCTATCTTCTGTGCGAGGTTGCTCACAATAGAGTATATGGACTTGGCCGAGCAGTCCCTTCAAGCTCTAAAGAAGATATCGCAGGAGCACCCCACTGCCTGCCTACGAGCAGGTGCACTTATGGCTGTGCTTTCTTATTTGGAATTCTTCTCAACAGGAGTTCAGCGAGTCGCATTGTCTACTGCAGCAAATATGTGCAAGAAACTTCCTTCAGACGCAGCTGACTTTGTGATGGAAGCTGTTCCGCTTCTGACAAACCTTCTTCAGTACCACGATTCCAAGGTGCTGGAGCATGCATCTGTTTGTTTGACTCGAATAGCTGAAGCATTTGCAGCCTCTCCGGACAAGTTAGATGAATTGTGCAATCATGGACTGGTAACACAAGCTGCCTCCCTCATTTCTAGCAGCAGTTCTGGAGGTGGACAGGCTTCTCTTAGCACGTCTACATATACTGGTTTAATCCGACTTCTTTCAACTTGTGCAAGCGGGTCCCCTCTTGGAGCTAAAACTTTACTTCTTCTTGGAATTAGTGGTATTCTTAAAGATATTTTATCTGGTTCTGGAGTTTCTTCTAATGCTTCTGTTTCTCCTGCATTAAGTAGGCCACCAGAACAGATATTTGAGATTGTAAACCTGGCAAATGAACTTCTGCCCCCATTGCCACAAGGAACAATTCCTCCCCCTGTCATCTCCTACTTGTTTTTTAAAGGACCTGTTGTTAAAAAGTCTCCTGTTGGGAGCTCTGGGAAACAGGAAGACACAAATGGAAATGTTCCTGAGATATCAGCTCGTGAGAAACTATTAAATGATCAGCCTGAGCTACTTAAGCAATTTGCGATGGATCTCCTTCCAGTTTTAATACAGATATATGGTTCTAGTGTCAATGGTCCTGTTCGGCACAGATGTCTTTCTGTCATTGGAAAGTTGATGTACTTTAGCACAGCAGAGATGATCCAGTCATTGTTGAGTGTGACAAATATATCTAGTTTCTTAGCTGGCGTCTTAGCGTGGAAAGATCCACAAGTTTTGATACCAGCCTTGAAAATTGCTGAAATTCTTATGGAAAAGCTTCCTGGGACATTCTCTAAGATGTTCATCAGAGAAGGTGTTGTGCATGCAGTGGACCAACTTATTTTAGCTGGAAATTCAACCAATATACAGGCATCTTCCTTGGAGAAGGATAATGATTCTCTATCTGGAGCATCATCTCGGTCTAGGCGTTATCGGCGACGCAGTGGGAACTCCAATCCTGATGGAAATCCATTGGATGATTTGAAGAGTCCAGTTGCAGTAAATGTTGGTTCCCCTCCAAGTTCTGCAGATATTACAACAATAAATTCTAGTATTCGGTTATCTGTTAGTGCAGCTGCTAAAGCTTTTAAAGATAAGTACTTTCCTTCAGATCCTGGGGCTGTTGAGGTGGGTGTTACTGATGATCTTTTACATCTGAAAAATCTTTGCACAAAGTTGAATGCTGGTGTAGATGGCCAAAGGACTAATGGTAAAGGAAAATCTAAAACATTTGGATTTGGTTTGGAAGAATATTTAATTGGGGTCATATCTGACATGCTAAAGGAACTTGGCAAAGGAGATGGTGTATCTACTTTTGAATTTATTGGTAGCGGTGTTGTTGCAACTTTGTTGAATTATTTTTCTTCTGGGTATTTCTCTAAAGAAAGACCCTTAGAAACCCACCTTCCGAAGCTTCGCCAACAAGCACTTACAAGGTTCAAGTCATTTATAGCTGTTGCACTACCTTCCACTACTGAATATGGGACTGTGGCTCCTATGACTGTCTTGGTCCAGAAGCTTCAAAATGCTCTGTCCTCCTTGGAGCGATTCCCTGTTGTGCTGAGCCATTCATCTAGGTCATCTAGTGGAAGTGCACGCCTCTCTTCCGGGCTAAGTGCATTGTCTCAGCCCTTCAAACTGCGGCTTTGTCGAGCCCAGGGTGAAAAATCACTTCGGGATTATTCATCTAATGTTGTACTGATTGATCCATTAGCAAGTTTAGCAGCCATTGAGGAATTTCTTTGGCCTCGTATCCAGCGAAGTGAATCTGGTCAGAAGTCCACTGTACCTGCTGGGAATTCAGAATCTGGGACAACTCCTGCAGGAGCTGGTGTATCTTCTCCCTCTACTTCTACTACTACTCGTCGTCATTCCACAAGATCAAGATCATCTGTTAATATAGGTGATATGCCCAGAAAGGAAATAGCTCAAGAAAAAAGCACAAGCTCATCTAAGGGTAAAGGAAAAGCTGTATTAAAGCCTGCACAGGAGGAATCAAGAGGACCTCAAACCAGGAATGCTGCTCGCAGAAGAGCAGCTCTTGATAAAGATGCTCAAATGAAGCCAGTAAATGATGAATCTACCTCTGAGGATGAAGATTTGGATATATCTCCTGTGGAGATTGATGAGGCATTGGTGATTGAAGATGATGATATTTCTGATGATGAAGATGATGACCATGAAGATGTTCTGAGGGATGATTCTCTCCCTGTTTGCTCACCTGACAACGTACATGATGTGAAGTTGGGTGACTCTGCTGAGGAGAGTACTATTGCTCCTGCAACAAGTGATGGCCAGACTAATGCTGCCTCAGGTTCTAGCAGCAAGGCTGGAACAGTCAGGGGATCAGACTCTGCTGATTTTAGGAGTGGCTATACTTCTAGCTCCAGGGGTGCAATGTCATTTGCTGCTGCTGCTATGGCTGGACTTGGATCTGCCAATAGCAGAGGTATCAGGGGTGGCAGAGATAGGCAAGGGCGTCCACTGTTTGGTAGTTCTAATGATCCTCCAAAGTTGATTTTTACTGCTGGTGGGAAGCAGCTTAATAGGCATTTAACTATATATCAGGCAATTCAAAGACAGCTTGTGCTTGATGAAGATGATGATGAGAGATTTGGTGGTAGTGACTATGTCTCAAGTGATGGAAGCAGGCTGTGGGGTGATATTTATACTATATTTTATCAGAGGGCAGAGAACCAAACAGATAGGGCTTCCCCTGGAGGTCCAAGCTCAAATGCTTCAAAATCCGGCAAATCTGGGTCTGTATACAATTCCAGTTCTGAAGCCAAGCTGCACCAGACTTCTGTATTAGATAGTATCTTGCAGGGAGAATTGCCCTGTGAACTGGAGAAAAGCAATCCTACATACAATATATTGGCACTATTGCGTGTGCTAGAGGGTTTGAACCAGCTTGCACCTCGTTTGAGGGCCCAAGCGGTTAGTGATAGCTTTGCAGAGGGAAAAATTTCAGATTTAGATGAGCTAAGTGTTACCTCTGGTGCTAGGGTTCCTGCAGAAGAATTTATAAGCAGCAAGCTTACTCCAAAATTAGCTAGGCAAATTCAAGATGCACTTGCCCTATGCAGTGGTAGTCTTCCCTCTTGGTGTTACCAGTTAACTAAAGCTTGCCCTTTTCTGTTTCCTTTTGAGACTCGGCGACAGTACTTCTATTCAACTGCCTTTGGGTTATCTCGTGCGCTGTATCGACTTCAGCAGCAGCAGGGTGCTGATGGTCATGGATCAACAAATGAAAGAGAGGTCAGGGTTGGCAGGTTGCAGAGGCAAAAGGTTCGTGTATCTCGAAACCGCATTTTGGATTCTGCTGCTAAAGTGATGGAGATGTATTCTAGTCAAAAGGCTGTACTTGAAGTAGAATATTTTGGTGAAGTTGGCACTGGTCTGGGTCCCACCCTTGAGTTCTATACACTTCTAAGTCATGACTTACAAAAAGTTGTACTTCAAATGTGGAGATCAGGTTCTTCAGAGAAATATCAAATGGAAATTGATGGAGATGAAAAAAAAATGAGAAGTATTGACGGATCTTTTACTGGAGATGGAGAACTTGTTGAAACTCCTCTCGGGTTGTTTCCTCGACCTTGGCCTGCAAATGCTGATGCATCGGAGGGGACCCAGTTCTTTAAAGTGATTGAATATTTCCGGCTTTTGGGCCGTGTAATGGCTAAAGCTCTTCAAGATGGACGCTTATTGGATTTACCATTGTCAGTGGCATTTTTTAAGCTTGTTCTTGGTCAAGAGCTTGATTTGCATGATATTCTTTTCATTGATGCTGAGCTTGGAAAAACTTTGCAAGAGTTAAATGCCCTTGTTTGCCGAAAACATTATATAGAATCTATTGGTGGTAGGTATGCCGATACAATTGCTAATTTGCATTTCCGTGGGGCCCCAGTTGAAGATCTATGCTTGGATTTTACTCTTCCTGGTTATCCAGACTGCATTTTGAATCCTGGAGATGAAATTGTTGACATCAATAATCTGGAGGAATACATATCCATGGTGGTTGATGCAACTGTCAAGACTGGAATAATGCGTCAAATGGAAGCATTTAGAGCAGGGTTTAATCAGGTTTTTGACATCTCATCTTTACAAATTTTTACTCCCCAAGAACTGGATTATTTGCTTTGTGGCCGGAGAGAATTGTGGAAGACAGAGACACTAGCTGATCACATAAAATTTGACCATGGGTATACTGCCAAGAGCCCTGCCATTATTAATTTACTTGAAATTATGGGAGAGTTCACACCAGAGCAGCAGCGTGCCTTCTGCCAATTTGTCACTGGTGCACCTAGGCTCCCCCCTGGTGGACTGGCAGTCTTAAATCCAAAACTAACGATTGTGAGGAAGCTTTCATCAACTGCAGCTAATGCTTCCTCCAATGGCAACGCACCTTCAGAATCAGCAGATGATGACTTGCCAAGTGTGATGACGTGTGCTAATTACCTGAAGCTTCCTCCTTATTCTACCAAGGAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCCTTTGATTTATCATGA 5655 0.4527 METRSRKRAEASSAAPSSSSSGPTTRSSKRTRLSSSSSAPATTAPPPPPPPPPPSVNTRSRASRTKEPLPPKNPPPMDPANESSGSRRDRRGKDNSDKGKEKEHDVRIRDRDAERGLALNVDGGGIGDEDDNDSEGGVGMLHQNLTSASSALQGLLRKLGAGLDDLLPSPAMGSASSSHQSGRLKKILFGLRADGEEGRQVEALTQLCEMLSIGTEDSLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYNAVPIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLEFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDSKVLEHASVCLTRIAEAFAASPDKLDELCNHGLVTQAASLISSSSSGGGQASLSTSTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGVSSNASVSPALSRPPEQIFEIVNLANELLPPLPQGTIPPPVISYLFFKGPVVKKSPVGSSGKQEDTNGNVPEISAREKLLNDQPELLKQFAMDLLPVLIQIYGSSVNGPVRHRCLSVIGKLMYFSTAEMIQSLLSVTNISSFLAGVLAWKDPQVLIPALKIAEILMEKLPGTFSKMFIREGVVHAVDQLILAGNSTNIQASSLEKDNDSLSGASSRSRRYRRRSGNSNPDGNPLDDLKSPVAVNVGSPPSSADITTINSSIRLSVSAAAKAFKDKYFPSDPGAVEVGVTDDLLHLKNLCTKLNAGVDGQRTNGKGKSKTFGFGLEEYLIGVISDMLKELGKGDGVSTFEFIGSGVVATLLNYFSSGYFSKERPLETHLPKLRQQALTRFKSFIAVALPSTTEYGTVAPMTVLVQKLQNALSSLERFPVVLSHSSRSSSGSARLSSGLSALSQPFKLRLCRAQGEKSLRDYSSNVVLIDPLASLAAIEEFLWPRIQRSESGQKSTVPAGNSESGTTPAGAGVSSPSTSTTTRRHSTRSRSSVNIGDMPRKEIAQEKSTSSSKGKGKAVLKPAQEESRGPQTRNAARRRAALDKDAQMKPVNDESTSEDEDLDISPVEIDEALVIEDDDISDDEDDDHEDVLRDDSLPVCSPDNVHDVKLGDSAEESTIAPATSDGQTNAASGSSSKAGTVRGSDSADFRSGYTSSSRGAMSFAAAAMAGLGSANSRGIRGGRDRQGRPLFGSSNDPPKLIFTAGGKQLNRHLTIYQAIQRQLVLDEDDDERFGGSDYVSSDGSRLWGDIYTIFYQRAENQTDRASPGGPSSNASKSGKSGSVYNSSSEAKLHQTSVLDSILQGELPCELEKSNPTYNILALLRVLEGLNQLAPRLRAQAVSDSFAEGKISDLDELSVTSGARVPAEEFISSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSTNEREVRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVVLQMWRSGSSEKYQMEIDGDEKKMRSIDGSFTGDGELVETPLGLFPRPWPANADASEGTQFFKVIEYFRLLGRVMAKALQDGRLLDLPLSVAFFKLVLGQELDLHDILFIDAELGKTLQELNALVCRKHYIESIGGRYADTIANLHFRGAPVEDLCLDFTLPGYPDCILNPGDEIVDINNLEEYISMVVDATVKTGIMRQMEAFRAGFNQVFDISSLQIFTPQELDYLLCGRRELWKTETLADHIKFDHGYTAKSPAIINLLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSTAANASSNGNAPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAISEGQGSFDLS* 1885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0393 1884 MobiDBLite consensus disorder prediction 661 708 - -
Apr5g0393 1884 MobiDBLite consensus disorder prediction 1181 1206 - -
Apr5g0393 1884 MobiDBLite consensus disorder prediction 1038 1062 - -
Apr5g0393 1884 Pfam HECT-domain (ubiquitin-transferase) 1511 1884 IPR000569 GO:0004842
Apr5g0393 1884 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 58 1884 IPR045322 GO:0006511|GO:0061630
Apr5g0393 1884 MobiDBLite consensus disorder prediction 10 40 - -
Apr5g0393 1884 MobiDBLite consensus disorder prediction 956 1160 - -
Apr5g0393 1884 SMART arm_5 341 379 IPR000225 GO:0005515
Apr5g0393 1884 SMART arm_5 258 299 IPR000225 GO:0005515
Apr5g0393 1884 SMART arm_5 215 256 IPR000225 GO:0005515
Apr5g0393 1884 SUPERFAMILY ARM repeat 184 656 IPR016024 -
Apr5g0393 1884 MobiDBLite consensus disorder prediction 1266 1293 - -
Apr5g0393 1884 Gene3D Hect, E3 ligase catalytic domain 1756 1882 - -
Apr5g0393 1884 Gene3D - 191 662 IPR011989 -
Apr5g0393 1884 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 58 1884 - -
Apr5g0393 1884 MobiDBLite consensus disorder prediction 41 57 - -
Apr5g0393 1884 MobiDBLite consensus disorder prediction 1 140 - -
Apr5g0393 1884 Gene3D Hect, E3 ligase catalytic domains 1403 1646 - -
Apr5g0393 1884 ProSiteProfiles HECT domain profile. 1584 1884 IPR000569 GO:0004842
Apr5g0393 1884 MobiDBLite consensus disorder prediction 956 1001 - -
Apr5g0393 1884 CDD HECTc 1463 1879 IPR000569 GO:0004842
Apr5g0393 1884 SUPERFAMILY Hect, E3 ligase catalytic domain 1455 1877 IPR035983 GO:0004842
Apr5g0393 1884 MobiDBLite consensus disorder prediction 83 117 - -
Apr5g0393 1884 SMART hect_3 1474 1884 IPR000569 GO:0004842
Apr5g0393 1884 MobiDBLite consensus disorder prediction 1063 1098 - -
Apr5g0393 1884 MobiDBLite consensus disorder prediction 1124 1160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0393 Apr-Chr5 3786661 3797159 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0393 K10590 - gmx:100783336 3128.19