Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0385 ATGGCTATTCAAGCACAGTTGTACCCAAATAACCTTGTCTCTTCATTTTGCAACAATGGTTATTATGTTGGGCCTGTTGATTCCCAATTCAATTCACAACAGAAACATCATTTGAGTGAGTTTTATAATAGGAGAGATGGACCTGTTGATCCAAATCTTCATGTTTCTGATTCAAAAGCCTTGAATTCTCCAATCATTGCTATTCAGCTAGAGAAACAATGGGAGGAGACTGATCAATACATCAGATTTCAGAATGAGAAACTCAGATATGAGTTACAAGAGCAAGGAAAGCAACATGTGGCATCATTACTTAAAAAATTAGAATCTCGTTCACTTCACATCCTGAGAGAAAAAGATGAAGAAATTGCAAAAGCTGCAAGGAAACGTTTGGAGTTAGAAGAGTATTTAAGAAATCTTGAGGCTGAAAATAGAAAGTGGCAAAGAGTGGCTCAAGAGAAGGAAACCATGGCATTAGCACTGTATAAAACATTGGAAGACATGAGAGAAGGTGGGTATTGTTCTAACAATGGGGTGGTGGCAAATGATGCGGAATCTTTCTGTGATGAAACAGGAGGAAGCCATGGGATTGAAGAAAAAAACAAAGGTGGGGTTAACAAGTTTGAACAGATTACGAGGGGAGTTATGTTATGTAAAAGCTGTCATTCTCGAGAATCGTGTTATCTGTTCCTCCCATGCAGGCACCTTGCTTCGTGCAAAGTTTGCAATGCTTTCCTCGAGGCTTGTCCAGTTTGCAGAACGCCAAAGAAAGCTAGCGTAGAGACTTTGATTTTCTAG 795 0.3937 MAIQAQLYPNNLVSSFCNNGYYVGPVDSQFNSQQKHHLSEFYNRRDGPVDPNLHVSDSKALNSPIIAIQLEKQWEETDQYIRFQNEKLRYELQEQGKQHVASLLKKLESRSLHILREKDEEIAKAARKRLELEEYLRNLEAENRKWQRVAQEKETMALALYKTLEDMREGGYCSNNGVVANDAESFCDETGGSHGIEEKNKGGVNKFEQITRGVMLCKSCHSRESCYLFLPCRHLASCKVCNAFLEACPVCRTPKKASVETLIF* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0385 264 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 263 IPR017066 -
Apr5g0385 264 Pfam Zinc finger, C3HC4 type (RING finger) 216 256 - -
Apr5g0385 264 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED 1 263 - -
Apr5g0385 264 SUPERFAMILY RING/U-box 212 256 - -
Apr5g0385 264 Gene3D - 226 261 - -
Apr5g0385 264 Coils Coil 115 156 - -
Apr5g0385 264 ProSiteProfiles Zinc finger RING-type profile. 217 252 IPR001841 -
Apr5g0385 264 Gene3D Death Domain, Fas 87 225 IPR011029 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0385 Apr-Chr5 3710165 3711322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0385 216 253 Miscellaneous Gene Families AT2G21380 42.105 4.13e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0385 K19042 - gmx:100813629 327.405