Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0353 ATGGCTCTGAACCTCGTACACCCCAAACTCCCTCTATCTTCTTCTTCCATTTCACACCACATACACTCTCATACTCTTTCAAAACCCTTCTTCCTCTTACACTCCAAAACCTCAACTTCACTACTCTCCAAAACCCTATGCGTATCTAATGCCCCACACGTTTCAACAACCCCCATTTTCCTCCCATATCTCCAACAACAACAAGAGGACATAGAAGAAGCACCAGAACCAGAACCGGAACCGGAACCGGAACTAGAAGTAGAAGATGACCCTGATGATCCAATCTACAAATTCTTCAAAACCCGCACTCGGGTTTCCTCTGAAGACCCTGGAAAAGAAGGAAAATTGTCCCTTCAGAAGAACCGTCGCATCTCATGGCATCTTGCCTCTGATACCAGTGACCTTGTTGAAGAAGAAGCTGAAATGGGTTTGGAGGAAAGTCCCTTGTTGGCTGAGGAGAAGGAAGAAATTGTATATCAGAAGAAGGTTTTACCTGAAGGCATCGTGGGGGAGATTGTTCAGCTTGCAAGGAACTTGCCACAAAATCTGACACTGGAAGAGGCTTTGGTTGAGTATGAAGGAAGAGTTCGTGAGAAAGAGTGCTGGGAGGTTTTGAAAATACTTGGGGAGGAGCATCTTCTGGTGTGTTGTTTGTATTTCTTTCAGTGGATGAGGATGCAGGAACCATCACTTGTTACACCTCGTGCATGTACTGTGTTGTTTCCATTTCTGGGAAGAGCAATGATGGGTGATAAGTTGATGGTTTTGTTCAGAAACTTACCATCTAGCAAGGACTTTAGAGATGTTCATGTTTATAATGCCGCTATGTCAGGCCTTCTCTCCAGTGGCAGGTATGAAGATGCTTGGAAGGTGTACGAGTCAATGGAAACGGATAACGTTCTTCCAGATCATGTGACATGCTCTATTATGGTTATTGTTATGAGAAAACTTGGCCATAGTGCAAAAGATGCATGGGAATTTTTTGAGAAAATGAGCAGAAAAGGAGTCAGATGGGGTGAAGAAGTCATAGGTGCACTAATAAAGTCATTTTGTGTTGAGGGTCTGATGAGTGAAGCTCTCATCGTCCTATCTGAAATGGAGAAGAAAGGGGTTTCTTCAAATGCAATTGTGTACAATACCTTGATGGATGCATATTGTAAATCCAAACGCTTGCAAGAAGCTGAAGGCCTTTTTGTTGAGATGAAAGCCAAAGGGATTAAGCCAACTGAAGCGACCTTCAACATTCTAATGCATGCATACAGCAGAAAAGCGCAACCTGAGATTGTGGAGAAGCTGCTGGCAGAAATGCAGGATGTTGGCTTGAAGCCAAATGCCAAATCATATACTTGCCTAATCGGTGCTTATGGGAAGCAGAGAAATATGAGTGACATGGCTGCAGATGCATTCTTGAAGATGAAGAAAGATGGTATTAAACCCTCTCCACATTCTTATACAGCTCTAATTCATGCTTATTCAGTTAGTGGCTGGCATGAGAAAGCTTATGCAGCATTTGAGAACATGCAAAGGGAAGGTATTAAACCTTCCATAGAAACCTACACTGCTTTACTAGATGCATTTAGACGTGCTGGTGACACCCAAACATTGATGAAAATATGGAAGTTGATGAGGAGGGAGAAAGTTGAAGGAACACGGGTGACATTCAACACTCTTGTCGATGGTTTTGCTAAACACGGTCTCTACAAGGAAGCAAGAGATGTAATATCTGAATTTGGGAATGCTGGATTGCACCCAACAGTGATGACATACAATATGCTGATGAATGCATATGCAAGAGGAGGGCAACACGAGAAGCTGCCAGAATTATTGGAAGAGATGGGAACTCATAACTTAAAGCCAGATTCTATAACTTATTCAACTATGATATACGCCTTCATCCGTGTTCGAGATTTTAGGCAGGCATTTTTTTACCACCAGGAGATGGTCAGGAGTGGGCAGGTGATGGATGTCAATTCTTACCAGAAGCTTCGAGCGATTCTGGATGTCAAAGCTACAATGAAAAACAAGAAGGATAGAAGATCCTTGATTGGTGTAGTTAGAAATAACATGGGAGTAGTGAAACCAAAGAGAAAAAAAGATGAGTTATGGAAGTACAGGAAAAGACATGTGAAAAATCGGTAG 2139 0.4245 MALNLVHPKLPLSSSSISHHIHSHTLSKPFFLLHSKTSTSLLSKTLCVSNAPHVSTTPIFLPYLQQQQEDIEEAPEPEPEPEPELEVEDDPDDPIYKFFKTRTRVSSEDPGKEGKLSLQKNRRISWHLASDTSDLVEEEAEMGLEESPLLAEEKEEIVYQKKVLPEGIVGEIVQLARNLPQNLTLEEALVEYEGRVREKECWEVLKILGEEHLLVCCLYFFQWMRMQEPSLVTPRACTVLFPFLGRAMMGDKLMVLFRNLPSSKDFRDVHVYNAAMSGLLSSGRYEDAWKVYESMETDNVLPDHVTCSIMVIVMRKLGHSAKDAWEFFEKMSRKGVRWGEEVIGALIKSFCVEGLMSEALIVLSEMEKKGVSSNAIVYNTLMDAYCKSKRLQEAEGLFVEMKAKGIKPTEATFNILMHAYSRKAQPEIVEKLLAEMQDVGLKPNAKSYTCLIGAYGKQRNMSDMAADAFLKMKKDGIKPSPHSYTALIHAYSVSGWHEKAYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMRREKVEGTRVTFNTLVDGFAKHGLYKEARDVISEFGNAGLHPTVMTYNMLMNAYARGGQHEKLPELLEEMGTHNLKPDSITYSTMIYAFIRVRDFRQAFFYHQEMVRSGQVMDVNSYQKLRAILDVKATMKNKKDRRSLIGVVRNNMGVVKPKRKKDELWKYRKRHVKNR* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0353 712 MobiDBLite consensus disorder prediction 69 93 - -
Apr5g0353 712 PANTHER OS03G0856100 PROTEIN 18 710 - -
Apr5g0353 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Apr5g0353 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Apr5g0353 712 MobiDBLite consensus disorder prediction 71 91 - -
Apr5g0353 712 Gene3D Tetratricopeptide repeat domain 322 466 IPR011990 GO:0005515
Apr5g0353 712 Gene3D Tetratricopeptide repeat domain 467 711 IPR011990 GO:0005515
Apr5g0353 712 Pfam Pentatricopeptide repeat domain 431 491 IPR002885 -
Apr5g0353 712 Pfam Pentatricopeptide repeat domain 504 559 IPR002885 -
Apr5g0353 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 550 584 IPR002885 -
Apr5g0353 712 PANTHER - 18 710 - -
Apr5g0353 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 444 479 IPR002885 -
Apr5g0353 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 480 514 IPR002885 -
Apr5g0353 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Apr5g0353 712 TIGRFAM PPR: pentatricopeptide repeat domain 482 515 IPR002885 -
Apr5g0353 712 TIGRFAM PPR: pentatricopeptide repeat domain 412 445 IPR002885 -
Apr5g0353 712 TIGRFAM PPR: pentatricopeptide repeat domain 588 620 IPR002885 -
Apr5g0353 712 TIGRFAM PPR: pentatricopeptide repeat domain 552 585 IPR002885 -
Apr5g0353 712 TIGRFAM PPR: pentatricopeptide repeat domain 622 655 IPR002885 -
Apr5g0353 712 TIGRFAM PPR: pentatricopeptide repeat domain 376 410 IPR002885 -
Apr5g0353 712 TIGRFAM PPR: pentatricopeptide repeat domain 518 548 IPR002885 -
Apr5g0353 712 TIGRFAM PPR: pentatricopeptide repeat domain 447 480 IPR002885 -
Apr5g0353 712 TIGRFAM PPR: pentatricopeptide repeat domain 271 303 IPR002885 -
Apr5g0353 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
Apr5g0353 712 Pfam PPR repeat family 584 631 IPR002885 -
Apr5g0353 712 Pfam PPR repeat family 267 311 IPR002885 -
Apr5g0353 712 Pfam PPR repeat family 374 421 IPR002885 -
Apr5g0353 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 585 619 IPR002885 -
Apr5g0353 712 Pfam PPR repeat 345 371 IPR002885 -
Apr5g0353 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 515 549 IPR002885 -
Apr5g0353 712 Gene3D Tetratricopeptide repeat domain 168 321 IPR011990 GO:0005515
Apr5g0353 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 620 654 IPR002885 -
Apr5g0353 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 338 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0353 Apr-Chr5 3294747 3297648 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0353 254 676 Glycosyltransferase AT1G05670 25.764 9.92e-48 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0353 - - gmx:100775643 1149.42