Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0352 ATGAGTTGGAGAGCGAATTCGGGTTTGGGTGATGGGTGGAACTACAACACGGATCTCACCGGCGGCTACTACGACGCCGGCGACAACGTTAAATTCGGGTTTCCCATGGCATTCACGACGACAATGCTGGCGTGGAGCGTGCTGGAATTCGGGGACTTGATGCCCCCTAACGAGCTTAGGAACGCACTCCTCGCAGTTCGTTGGGCTACTGATTATTTGCTCAAAACTGTTTCTCAGCCCAATCGCATTTTCGTTCAGGTGGGTGATCCAAGTTCAGACCACGATTGTTGGGAGAGGCCAGAGGACATGGATACAGCCAGGACTACGTATGCTGTTGATGCACCAAACGCCGCTTCCGATGTCGCCGGTGAAACAGCCGCCGCACTAGCAGCCTCATCCATGGCATTCCGGTCATCGGACCCTGGTTATTCAGAGACATTGCTTCGAAATGCAATCACTGCTTTTCAATTTGCAGATAACTATAGGGGTGCTTACAGTGACAATAATAATGTCAAGTACGGTGCCTGCCCATATTATTGTGACTTCGATGGCTACCAGGATGAGTTGTTATGGGGAGCCGCATGGCTAAGGAGGGCTACACAGGACGTCAATTTCTTAAACTACATTCAAAGCAATGGCAAAACGCTTGGTGCTGACGACAACATAAATGAATTTGGTTGGGACAACAAGCATGCTGGCCTTAACGTACTTGTCTCCAAGGAAGTTATAGAAGAAAACATGTACTCTCTAGAGTCCTACAAGTCCTCAGCAGAGAGCTTCATTTGCACACTCATACCTGAAACACCAAGCTCACACATAGAGTACACCCCTGGTGGACTAGTGTACAGACCCGGAGGTAGCAACTTGCAACATGCAACTTCAATCGCTTTCCTTGAGTTGGTTTATGCCAATTACCTAACACGCACGTCGCAAACCATCAATTGCGGAAACGTCTATGTTAGTGCACAAACACTTCGCCAACATGCTAAGAGGCAAGTTGATTACATTTTGGGTGATAACCCAATGGGTTTATCCTACATGGTTGGCTATAGCAACTACTATCCGCAGCGTATTCATCACCGTGGCTCTTCTTTACCCTCGATCAAGGATCATCCCCAGTTCATCGCATGCAAAGAAGGGTCAATCAACTACAACTCAACGAATCCCAATCCTAATGTGCTTTTGGGAGCCATTGTTGGAGGACCTGATGAAAATGATGTTTATGTGGATGATCGAGTTGATTTTAGGAAATCTGAGCCAACCACATACATTAACGCACCGTTTGTAGGGGTTTTAGCATATTTTGCTGCTAATCCCTACTTTAATTAA 1329 0.4703 MSWRANSGLGDGWNYNTDLTGGYYDAGDNVKFGFPMAFTTTMLAWSVLEFGDLMPPNELRNALLAVRWATDYLLKTVSQPNRIFVQVGDPSSDHDCWERPEDMDTARTTYAVDAPNAASDVAGETAAALAASSMAFRSSDPGYSETLLRNAITAFQFADNYRGAYSDNNNVKYGACPYYCDFDGYQDELLWGAAWLRRATQDVNFLNYIQSNGKTLGADDNINEFGWDNKHAGLNVLVSKEVIEENMYSLESYKSSAESFICTLIPETPSSHIEYTPGGLVYRPGGSNLQHATSIAFLELVYANYLTRTSQTINCGNVYVSAQTLRQHAKRQVDYILGDNPMGLSYMVGYSNYYPQRIHHRGSSLPSIKDHPQFIACKEGSINYNSTNPNPNVLLGAIVGGPDENDVYVDDRVDFRKSEPTTYINAPFVGVLAYFAANPYFN* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0352 442 PANTHER ENDOGLUCANASE 24 1 440 - -
Apr5g0352 442 Gene3D - 1 439 IPR012341 GO:0005975
Apr5g0352 442 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 408 426 IPR033126 -
Apr5g0352 442 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 335 361 IPR018221 -
Apr5g0352 442 PANTHER ENDO-1,4-BETA-GLUCANASE 1 440 - -
Apr5g0352 442 SUPERFAMILY Six-hairpin glycosidases 2 437 IPR008928 GO:0005975
Apr5g0352 442 Pfam Glycosyl hydrolase family 9 2 432 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0352 Apr-Chr5 3288488 3292154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0352 1 438 Glycoside Hydrolase AT1G70710 58.904 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0352 K01179 - gmx:100101849 868.996