Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0347 ATGGATGCAATCAGAAAGCAAGCTTCGAAGCTTCGAGAACAGGTCGCTCGCCAGCAACAGCTACATCAGAAACTTGAGAAACTCTATATATCGACACGTGCGGGGAAGCATTATCAAAGGGATATTGTCCGTGGTGCAGAAGGTTATATAGTTACTGGGTCCAAGCAAGTTGAAATAGGAACAAAGTTGTCAGAAGATAGCAGAAAATATGGTGCAGAAAATACTTGTACCAGTGGTAATACATTGTCTCGAGCTGCACTAAGTTTTGCACGAGCCCATGCTCACATGGAGAAGGAGCGTGGAAACTTACTAAAAGCTCTTGGTACACAGGTTGCAGAGCCCTTGAGGGCAATGGTGGTTGGAGCTCCATTGGAGGATGCTCGGCATCTTGCTCAACGTTATGACAGAATGCGACAAGAAGCTGAAGCCCAGGCTATTGAAGTTTCTAAACGCCAGGCAAAAGTAAGAGAAACGCCAGGCAATGCTGAGAATGCTATGAAATTAGAAGCAGCTGAAGCGAAGTTGCAAGACCTCAAGACAAACATGGCCATACTGGGGAAGGAAGCAGCTGCAGCATTGGCTGCTGTTGAAGCACAGCAACAGAGGCTAACTCTTCAACGTCTTATAGCTATGGTTGAAGCAGAGCGTGCCTATCATCAAATAGTCCTACAAATATTTGATCAGCTTGAGGGAGAGATGATATCAGAACGACAACGGATTGAAGCCCCTTCTACTCCTAGTGTGGATAACAGCATGCCACCACCCCCGTCATATGAAGAAGTGAATGGGGTCTATGCATCTCAGACACATAATGGATCAACAGATAGCATGGGTTACTTCTTAGGAGAGGTTTTATTTCCATATTCTGCTGTATCTGAAGTGGAGCTGAATCTATCAGTTGGTGATTATGTTGTTGTCCGAAAGGTAACAAACAGCGGATGGGCCGAGGGTGAATGCAAAGGCAAGGCAGGTTGGTTTCCATTTAGTTACATTGAAAGGAGGGAGCGGGTTCTTGCAAGCAAGGTGGCTGAAGTGTTTTGA 1041 0.4573 MDAIRKQASKLREQVARQQQLHQKLEKLYISTRAGKHYQRDIVRGAEGYIVTGSKQVEIGTKLSEDSRKYGAENTCTSGNTLSRAALSFARAHAHMEKERGNLLKALGTQVAEPLRAMVVGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNAENAMKLEAAEAKLQDLKTNMAILGKEAAAALAAVEAQQQRLTLQRLIAMVEAERAYHQIVLQIFDQLEGEMISERQRIEAPSTPSVDNSMPPPPSYEEVNGVYASQTHNGSTDSMGYFLGEVLFPYSAVSEVELNLSVGDYVVVRKVTNSGWAEGECKGKAGWFPFSYIERRERVLASKVAEVF* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0347 346 Gene3D Arfaptin homology (AH) domain/BAR domain 20 243 IPR027267 -
Apr5g0347 346 Coils Coil 161 188 - -
Apr5g0347 346 PANTHER SH3 DOMAIN-CONTAINING 1 20 - -
Apr5g0347 346 PANTHER SH3 DOMAIN-CONTAINING 20 346 - -
Apr5g0347 346 SUPERFAMILY SH3-domain 279 334 IPR036028 GO:0005515
Apr5g0347 346 Gene3D SH3 Domains 267 344 - -
Apr5g0347 346 ProSiteProfiles Src homology 3 (SH3) domain profile. 277 336 IPR001452 GO:0005515
Apr5g0347 346 SMART SH3_2 280 335 IPR001452 GO:0005515
Apr5g0347 346 Coils Coil 195 215 - -
Apr5g0347 346 PANTHER PROTEIN, PUTATIVE-RELATED 1 20 - -
Apr5g0347 346 PANTHER PROTEIN, PUTATIVE-RELATED 20 346 - -
Apr5g0347 346 SUPERFAMILY BAR/IMD domain-like 20 233 IPR027267 -
Apr5g0347 346 Pfam Variant SH3 domain 284 332 IPR001452 GO:0005515
Apr5g0347 346 Coils Coil 1 28 - -
Apr5g0347 346 Coils Coil 124 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0347 Apr-Chr5 3246716 3250121 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0347 - - gmx:100777051 619.387