Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0346 ATGGGAAGTTTGGGCGCGATTCTGAAACGACCAGATGACTTTTACCCGCTTCTGAAGCTGAAAATGGCGGCGAGAAACGCCGAGAAGCAGATCCCGACGGAGCCACACTGGGGCTTCTGCTACACTATGCTCCACAAGGTTTCTCGCAGTTTTGCCCTCGTCATTCAGCAACTCGGTCCCGAACTTCGCAACGCTGTTTGCATATTTTATTTGGTTCTTCGAGCTCTCGATACCGTTGAGGACGATACTAGCATAGCTACAGAAGTCAAGGTGCCAATACTGATAGCTTTTCATCGTCATATTTATGATCATGAATGGCACTTTTCATGTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGTTTCATCATGTTTCAACTGCTTTTCTGGAACTTGGAAAGAACTATCAAGAAGCAATCGAGGACATTACCAAAAGAATGGGTGCTGGAATGGCCAAATTTATTTGCAAGGAGGTAGAAACAATTGATGACTATGATGAATATTGTCACTACGTGGCAGGCCTTGTTGGGCTGGGTTTATCAAAGCTTTTCCATGCCTCTGGTTTAGAAGATCTGGCCCCAGATTACCTTTCCAATTCAATGGGCTTATTTCTTCAGAAAACAAACATTATTCGAGATTATCTGGAAGACATTAATGAGATCCCCAAGTCACGCATGTTTTGGCCACGGCAGATCTGGAGTAAATATGTTAATAAACTCGAGGATTTGAAATATGAGGAAAACTCTGTTAAGGCAGTGCAGTGCTTAAATGACATGGTCACTAATGCTCTGATGCATGCTGAAGATTGCTTAAAATACATGGCTGCTTTACGAGACCTGGCTATATTTCGCTTTTGTGCTATACCCCAGATAATGGCAATTGGAACACTTGCATTGTGCTACAACAACATTGAGGTCTTCAGAGGTGTAGTTAAAATGAGACGAGGTTTAACTGCCAAAGTGATTGATCGAACAAAGACTATGTCTGATATCTATGGTGCTTTCTTTGATTTTGCTTCTTTGTTGGAGTCCAAGGTTGACAAAAGTGATCCCAATGCAACAAAAACATTGAGCAGGCTGGAAGCTATAAAGAAAACTTGCAGAGAATCTGGTCTCTTGAGCAAAAGGAAATCTTACATTATGAGGGATGAAAATGGATATGGCTCAACCATGATTGTCATACTGGTGATCATGTTTGCCATCATTTTTGCTTATCTGTCAGCTAATCAGCAAAATAACTAG 1242 0.4171 MGSLGAILKRPDDFYPLLKLKMAARNAEKQIPTEPHWGFCYTMLHKVSRSFALVIQQLGPELRNAVCIFYLVLRALDTVEDDTSIATEVKVPILIAFHRHIYDHEWHFSCGTKEYKVLMDQFHHVSTAFLELGKNYQEAIEDITKRMGAGMAKFICKEVETIDDYDEYCHYVAGLVGLGLSKLFHASGLEDLAPDYLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPRQIWSKYVNKLEDLKYEENSVKAVQCLNDMVTNALMHAEDCLKYMAALRDLAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTKTMSDIYGAFFDFASLLESKVDKSDPNATKTLSRLEAIKKTCRESGLLSKRKSYIMRDENGYGSTMIVILVIMFAIIFAYLSANQQNN* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0346 413 PANTHER FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE 1 410 IPR044844 GO:0004311
Apr5g0346 413 SUPERFAMILY Terpenoid synthases 37 367 IPR008949 -
Apr5g0346 413 Pfam Squalene/phytoene synthase 45 315 IPR002060 GO:0009058
Apr5g0346 413 SFLD Isoprenoid Synthase Type I 37 325 - -
Apr5g0346 413 SFLD Squalene/Phytoene Synthase Like 37 325 IPR002060 GO:0009058
Apr5g0346 413 CDD Trans_IPPS_HH 38 320 IPR033904 GO:0004311
Apr5g0346 413 PANTHER SQUALENE SYNTHASE-LIKE ISOFORM X1 1 410 - -
Apr5g0346 413 ProSitePatterns Squalene and phytoene synthases signature 1. 168 183 IPR019845 GO:0016765
Apr5g0346 413 ProSitePatterns Squalene and phytoene synthases signature 2. 201 229 IPR019845 GO:0016765
Apr5g0346 413 TIGRFAM squal_synth: farnesyl-diphosphate farnesyltransferase 36 367 IPR006449 GO:0004310|GO:0008610
Apr5g0346 413 Gene3D Farnesyl Diphosphate Synthase 34 370 IPR008949 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0346 K00801 - gmx:547940 781.556