Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0333 ATGAATCGAACTCTCGTCTTCTTCGCTCTCTTCTCCGTCCTCTTCGTCTCTGCAATTTCCTCCGACGGCGACGGAGACACCTTCATCCGGCAGGTGGTCGACGGCGTGAGGTTGGGTGCAGAGCACCACTTTTTGGACTTCAAGCGTAGGTTTGGCAAGGCCTACGCTTCCCAGGAAGAGCATGATTACAGGTTCAGGGTGTTCAAGGCTAACTTGCGCCGCGCTCGGCGCCACCAGAGTCTGGACCCTTCGGCGGTTCACGGCGTGACTCGGTTCTCCGACCTGACACCGTCGGAGTTTCGGAAGAACGTTTTGGGACTGAGAGGTGTGAGGTTGCCTTCCGATGCGAATAAGGCTCCCATTCTCCCCATCGATAATCTTCCAAACGATTTTGATTGGAGAGATCATGGAGCAGTTACCTCTGTCAAGAATCAGGGTTCGTGTGGTTCGTGTTGGAGCTTCAGCACCACTGGGGCACTCGAAGGTGCTCACTTTCTCGCTACAGGGGAGCTTGTAAGTCTTAGCGAGCAGCAACTTGTTGATTGTGATCACGAGTGTGATCCAGATGAACCGGGTTCTTGCGACTCCGGGTGCAACGGTGGATTGATGAATAGTGCTTTTGAGTACATCCTTAAGTCTGGTGGGGTCATGCGCGAGGAAGACTATCCTTATTCTGGCACTGACAAAGGGATCTGCAAATTTGACAGAGCAAAGATTGCAGCATCAGTTGCAAACTTCAGTGTCGTTTCACTTGATGAAAACCAGATTGCTGCGAATCTTGTGAAGAATGGTCCTCTTGCAGTGGCCATCAATGCAGTGTTTATGCAGACATATATTGGGGGAGTGTCATGCCCATACATATGTTCAAGACGGCTGGATCATGGGGTCTTACTGGTGGGATATGGTTCTGGTGCCTATGCACCCATTCGGATGAAGGAGAAGCAATATTGGATCATTAAAAACTCCTGGGGAGAGAACTGGGGAGAAAATGGATACTACAAGATTTGCCGAGGACGAAATATCTGTGGGGTGGACTCCATGGTTTCAACTGTGGCAGCTGTTCATACAAATACTCAGTAG 1080 0.5046 MNRTLVFFALFSVLFVSAISSDGDGDTFIRQVVDGVRLGAEHHFLDFKRRFGKAYASQEEHDYRFRVFKANLRRARRHQSLDPSAVHGVTRFSDLTPSEFRKNVLGLRGVRLPSDANKAPILPIDNLPNDFDWRDHGAVTSVKNQGSCGSCWSFSTTGALEGAHFLATGELVSLSEQQLVDCDHECDPDEPGSCDSGCNGGLMNSAFEYILKSGGVMREEDYPYSGTDKGICKFDRAKIAASVANFSVVSLDENQIAANLVKNGPLAVAINAVFMQTYIGGVSCPYICSRRLDHGVLLVGYGSGAYAPIRMKEKQYWIIKNSWGENWGENGYYKICRGRNICGVDSMVSTVAAVHTNTQ* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0333 359 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 292 302 IPR025660 -
Apr5g0333 359 Pfam Cathepsin propeptide inhibitor domain (I29) 44 100 IPR013201 -
Apr5g0333 359 Gene3D Cysteine proteinases 27 352 - -
Apr5g0333 359 PANTHER CYSTEINE PROTEASE RD19C-RELATED 33 353 - -
Apr5g0333 359 PRINTS Papain cysteine protease (C1) family signature 145 160 IPR000668 GO:0006508|GO:0008234
Apr5g0333 359 PRINTS Papain cysteine protease (C1) family signature 294 304 IPR000668 GO:0006508|GO:0008234
Apr5g0333 359 PRINTS Papain cysteine protease (C1) family signature 316 322 IPR000668 GO:0006508|GO:0008234
Apr5g0333 359 SMART Inhibitor_I29_2 44 100 IPR013201 -
Apr5g0333 359 SMART pept_c1 127 352 IPR000668 GO:0006508|GO:0008234
Apr5g0333 359 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 33 353 - -
Apr5g0333 359 SUPERFAMILY Cysteine proteinases 42 351 IPR038765 -
Apr5g0333 359 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 316 335 IPR025661 -
Apr5g0333 359 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 145 156 IPR000169 -
Apr5g0333 359 CDD Peptidase_C1A 128 351 IPR039417 -
Apr5g0333 359 Pfam Papain family cysteine protease 127 350 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0333 Apr-Chr5 3061741 3064040 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0333 K01373 - gmx:100791283 645.966