Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr5g0327 | ATGCTCGTGTTGTTTGAAACACCGGCGGGTTTTGCCCTTTTTAAAGTGCTAAATGAAGGCAAGCTTTCTAAAGTTGAGGACTTGTGGGAGGACTTTTCCAGTGCCGATTCTGCTAGACAGGTGGTCAAGTTGAAAGCATTTTCTAAATTCGAGAATACTTCAGAGGCTCTAGAGGCAGCTACTTTACTGATAGAAGGAAAAGCTAGCAAGGGTCTGCGCAAGTTCCTGCGTGCTCATTGTGAAAATGAAACACTAGGTGTTGCTGATTCAAAGCTTGGAAATGTGATTAAGGAGAAATTGAAAATCGATTGTATTCACAACAATGCAGTTATGGAGTTGATTAGAGGTGTTAGAAATCAGTTAACTGAACTCATAGCTGGTCTAGCTGTGCAAGACATGGCCCCAATGAGCTTGGGTTTATCTCATAGCTTATCCAGATACAAATTGAAGTTTAGTGCAGAGAAGGTGGATACCATGATTGTCCAGGCTATTGGTTTACTTGATGATCTTGATAAAGAATTGAATACATATGCCATGAGGGTTCGAGAATGGTATGGTTGGCATTTTCCAGAGCTTACTAAAATAATACAGGATAACATTCTTTATGCAAGGGCAGTTAAGTTGATGGGTGATCGTGTTAATGCAGCTGGGCTTGATTTCTCAGAGATATTGCCAGAGGAAGTTGAGGCAGAGCTGAAGGAGGCAGCTGTGATATCTATGGGAACTGAAATTGGTGAGCTCGATTTGGCAAATATTAGAGAACTCTGTGACCAGGTTTTGTCTCTTTCAGAATACAGAGCACAACTCTATGATTATCTTAAGAGTAGGATGAACACCATTGCACCAAATTTGACTGCTCTGGTTGGGGAGCTTGTTGGTGCTCGCCTCATTGCCCATGGAGGTAGTTTGTTAAATCTTGCAAAGCAGCCTGGTAGTACTGTGCAGATTCTTGGTGCTGAGAAAGCACTCTTTAGGGCACTGAAGACTAAGCATGCCACTCCCAAGTATGGTCTTATATATCATGCATCCTTGATTGGTCAGGCAGCTCCAAAGTTCAAGGGGAAAATTTCTCGGTCACTTGCTGCAAAGACAGCATTGGCTATTAGGTGTGATGCACTTGGAGATGGACAAGATAATACCATGGGGTTGGAGAACAGGGCAAAGCTTGAAGCACGATTGAGGAACCTTGAAGGCAAAGAATTAGGCCGTTTTGCTGGTTCTGCCAAGGGGAAACCCAAGATAGAAGCATATGACAAGGACAGAAAGAAAGGAGCCGGGGGACTGATAACCCCAGCTAAGACATATAATCCTTCAGCTGATTCAGTTATTGGGCAAATGGTTGATTCTGCTATGGATGAAGATACACAAGAACCTTCTGTTGCCGATAAAAAGAAAGAGAAGAAAGACAAGAAGAAAAAGAAGGAGAAAAATGAAGAGGATGAAACTTTGGTAGCTGATGGAGATGCTGGTGAGGAACCAGAACCTGAAGTTGTGAAGAAGGAAAAGAAGAAGAAAAGGAAGGAATCCACGGAGAATGTTGAGTTGCAGAATGGGGATGATAGTTTGAATGCAGGAGAAAAGAAGAAAAAGAGGAAAAAGCATGCAGAGCAGGAAGAATTAGCTGAAATGCCAAGCAAAAAGAAAGGAAAAAAGAAGAAAAATGATGACTAA | 1671 | 0.4213 | MLVLFETPAGFALFKVLNEGKLSKVEDLWEDFSSADSARQVVKLKAFSKFENTSEALEAATLLIEGKASKGLRKFLRAHCENETLGVADSKLGNVIKEKLKIDCIHNNAVMELIRGVRNQLTELIAGLAVQDMAPMSLGLSHSLSRYKLKFSAEKVDTMIVQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIIQDNILYARAVKLMGDRVNAAGLDFSEILPEEVEAELKEAAVISMGTEIGELDLANIRELCDQVLSLSEYRAQLYDYLKSRMNTIAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAPKFKGKISRSLAAKTALAIRCDALGDGQDNTMGLENRAKLEARLRNLEGKELGRFAGSAKGKPKIEAYDKDRKKGAGGLITPAKTYNPSADSVIGQMVDSAMDEDTQEPSVADKKKEKKDKKKKKEKNEEDETLVADGDAGEEPEPEVVKKEKKKKRKESTENVELQNGDDSLNAGEKKKKRKKHAEQEELAEMPSKKKGKKKKNDD* | 557 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr5g0327 | 556 | MobiDBLite | consensus disorder prediction | 492 | 514 | - | - | |
| Apr5g0327 | 556 | MobiDBLite | consensus disorder prediction | 521 | 556 | - | - | |
| Apr5g0327 | 556 | PANTHER | PROTEIN NOP56, PUTATIVE-RELATED | 1 | 555 | - | - | |
| Apr5g0327 | 556 | Coils | Coil | 460 | 481 | - | - | |
| Apr5g0327 | 556 | Pfam | snoRNA binding domain, fibrillarin | 166 | 394 | IPR002687 | - | |
| Apr5g0327 | 556 | Pfam | NOP5NT (NUC127) domain | 2 | 66 | IPR012974 | - | |
| Apr5g0327 | 556 | SUPERFAMILY | Nop domain | 153 | 397 | IPR036070 | - | |
| Apr5g0327 | 556 | Gene3D | Nop domain | 285 | 397 | IPR042239 | - | |
| Apr5g0327 | 556 | Gene3D | - | 129 | 284 | - | - | |
| Apr5g0327 | 556 | SMART | NOSIC_2 | 159 | 211 | IPR012976 | - | |
| Apr5g0327 | 556 | PANTHER | NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 | 1 | 555 | IPR045056 | GO:0030515|GO:0031428|GO:0032040 | |
| Apr5g0327 | 556 | ProSiteProfiles | Nop domain profile. | 280 | 398 | IPR002687 | - | |
| Apr5g0327 | 556 | MobiDBLite | consensus disorder prediction | 407 | 556 | - | - | |
| Apr5g0327 | 556 | MobiDBLite | consensus disorder prediction | 412 | 426 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr5g0327 | Apr-Chr5 | 3007147 | 3012256 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr5g0327 | K14565 | - | gmx:100775301 | 923.309 |