LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr5g0323	ATGTCAGGCCCACTCGACCGTTTCGCTAGACCTTGTTTTGAGGGGTTTTCAGGGAGTGATGAGAAGAAGGAAAGGAGATCTGATTTTGAGAACTCCGAGGATGAAAGGAGAACCAGAATTGGATCTCTCAAGAAGAAAGCGCTGAATGCGTCTTCCAAGTTCAAGCATTCGCTGAAAAAGAAGAGTAGTAGGAGAAAAAGCGATGGTCGTGTTAGTTCTGTTTCCATTGAGGATGTTCGTGACGTTGAGGAGTTGCAGGCCGTTGATGCCTTTCGCCAATCCTTGATTATGGATGAACTGCTTCCTGAAAAACACGACGATTACCATATGATGTTGAGGTTCCTGAAAGCGAGGAAGTTTGATATTGAAAAGGCAAAGCATATGTGGGCTGATATGCTACAATGGAGGAAGGAGTTTGGCGCTGACACTATTATGGAGGATTTTGAGTTCAAAGAAGTAAATGAAGTTGTGAGGTATTATCCACATGGTCATCACGGTGTTGATAAGGAGGGGAGACCTGTTTACATTGAAAGACTTGGGAAGGTGGACCCAAACAAACTTATGCAAGCTACGACCATGGATAGGTATGTAAAGTACCATGTACAGGAGTTTGAGAAAGCTTTTGCGATAAAGTTTCCTGCTTGCACAATTGCTGCTAAAAGGCACATAGATTCAAGCACCACAATCTTAGATGTTCAAGGCGTGGGCCTTAAGAACTTTACAAAGTCTGCCCGGGATCTAATTATGCGATTGCAAAAGATTGACGGTGACAATTACCCTGAGACTCTTTGCCAAATGTTTATTATAAATGCTGGCCCTGGGTTTAGGTTGCTCTGGAACACTGTCAAGTCTTTTCTTGATCCCAAAACAACTTCAAAGATTCATGTTCTTGGAAACAAGTATCAAAGCAAATTGCTTGAAATAATTGATGCCAGTGAGTTACCGGAATTTCTGGGAGGTACCTGTACCTGCGCAGATCAGGGTGGTTGCCTCAGATCTGATAAAGGGCCCTGGAAAAACCCTGAAATATTGAAGATGATTCTCAGTGGTGAAGCGCGACGGGCAAGGCAGGTAGTAAAAGTTTTAAATAGTGAAGGAAAGGTTATTGCATATGCCAAACCACGATACCCAATGGTAAAAGGAAGTGACACATCCACAGCTGAATCAGGGTCTGAAGCTGAAGATATAGCTTCTCCCAAAGCAATGAAGAGTTACGCTCACATGAGGTTGACGCCTGTTCGTGAGGAAGCTAAGGTAGTTGGAAAGTCAAGCTATGCTGGTAGTTGTAACTTGGCTGGGTATGATGAATACGTTCCAATGGTGGACAAAGCTGTTGATGCTGGCTGGAAGAATCAAACATCATTCCAGAGGTCTCAAACTTCAAAAGGAACACCTTCCCTCCTTGACACTCCTAAAACTCCTGAAGGGATTCGAGCTCGGGTCTGGGTAGCTCTGACTGTCTTCTTTTTGACCCTGTTCACTTTCTTCCGTTCAGTCGCATGCCGTGTGACCAAGAAACTTCTTGCAGTATCATGTAACGGTTATCAGAGCACTTCAGAACCAACCTTTGATACAGCAAACAATGAGAAACTTCCTTCCCCGACTCCAGCATATACAGAGGCAAATCTCCTTTCCTCCATGATGAAGAGGTTAGGTGAGCTTGAAGAGAAGGTCAACACACTCCAATCTAAGCCATCTGAAATGCCATATGAGAAAGAAGAATTGCTAAATGCTGCTGTTTGTCGGGTGGATGCCTTGGAAGCAGAGCTAATTGCAACTAAAAAGGCTCTTTATGAGGCGTTAATGAGGCAAGAAGAGCTGCTTGCTTACATTGATAGCCAAGAAGAAGCTAAGTTACGGAAGAAATTTTGCTGGTGA	1878	0.4377	MSGPLDRFARPCFEGFSGSDEKKERRSDFENSEDERRTRIGSLKKKALNASSKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQAVDAFRQSLIMDELLPEKHDDYHMMLRFLKARKFDIEKAKHMWADMLQWRKEFGADTIMEDFEFKEVNEVVRYYPHGHHGVDKEGRPVYIERLGKVDPNKLMQATTMDRYVKYHVQEFEKAFAIKFPACTIAAKRHIDSSTTILDVQGVGLKNFTKSARDLIMRLQKIDGDNYPETLCQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCADQGGCLRSDKGPWKNPEILKMILSGEARRARQVVKVLNSEGKVIAYAKPRYPMVKGSDTSTAESGSEAEDIASPKAMKSYAHMRLTPVREEAKVVGKSSYAGSCNLAGYDEYVPMVDKAVDAGWKNQTSFQRSQTSKGTPSLLDTPKTPEGIRARVWVALTVFFLTLFTFFRSVACRVTKKLLAVSCNGYQSTSEPTFDTANNEKLPSPTPAYTEANLLSSMMKRLGELEEKVNTLQSKPSEMPYEKEELLNAAVCRVDALEAELIATKKALYEALMRQEELLAYIDSQEEAKLRKKFCW*	626

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr5g0323	625	MobiDBLite	consensus disorder prediction	16	42	-	-
	Apr5g0323	625	SMART	sec14_4	152	323	IPR001251	-
	Apr5g0323	625	ProSiteProfiles	CRAL-TRIO lipid binding domain profile.	152	326	IPR001251	-
	Apr5g0323	625	Coils	Coil	544	564	-	-
	Apr5g0323	625	PRINTS	Cellular retinaldehyde-binding protein signature	110	132	-	-
	Apr5g0323	625	PRINTS	Cellular retinaldehyde-binding protein signature	279	298	-	-
	Apr5g0323	625	PRINTS	Cellular retinaldehyde-binding protein signature	312	321	-	-
	Apr5g0323	625	Gene3D	-	21	139	-	-
	Apr5g0323	625	Gene3D	-	140	350	IPR036865	-
	Apr5g0323	625	Pfam	CRAL/TRIO domain	159	320	IPR001251	-
	Apr5g0323	625	MobiDBLite	consensus disorder prediction	1	70	-	-
	Apr5g0323	625	MobiDBLite	consensus disorder prediction	49	66	-	-
	Apr5g0323	625	PANTHER	CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED	3	620	-	-
	Apr5g0323	625	SMART	CRAL_TRIO_N_2	107	132	IPR011074	-
	Apr5g0323	625	CDD	SEC14	150	321	IPR001251	-
	Apr5g0323	625	Pfam	CRAL/TRIO, N-terminal domain	103	131	IPR011074	-
	Apr5g0323	625	SUPERFAMILY	CRAL/TRIO N-terminal domain	82	148	IPR036273	-
	Apr5g0323	625	PANTHER	PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH8	3	620	-	-
	Apr5g0323	625	SUPERFAMILY	CRAL/TRIO domain	152	345	IPR036865	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr5g0323	Apr-Chr5	2924623	2930046	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr5g0323	86	317	Acyl Lipid Metabolism Gene Families	AT5G47730	27.823	6.37e-20	89.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr5g0323	-		-	gmx:100785793	1099.35