Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0322 ATGCAGAGCTTTGAATCCTTTCTTTCTTGGCAGAGAAAACAATGGAAAGCGAATATTGAATATTCAGAGGATGATAAGAAGACAAAGCTTGGCTCTTTAAAGAAGGTAGCAATCAATGCATCTTCAAAGTTCAGGCATTCCTTGCAAAAGAAGGGGAGGAGGCATAGCAGGGTTATGTCTGTTGCTATTGAGGATGAACTTGATGCAGAAGAGTTGCAGGCAGTTGATGCTTTTCGTCAAGCACTTATCTTGGAAGAGCTATTACCTGCAAAACATGATGATCATCATATGATGCTAAGATTCTTGAGAGCAAGGAAATTTGACATTGAGAAAACAAAGCAAATGTGGGCTGATATGCTTCAGTGGAGGATGGAGTTTGGTGCTGACACCATCATGGAGGATTTTGACTTCAAGGAGATAGATGAAGTTCTAAAATACTACCCTCAAGGGCATCATGGAGTTGATAAGGAGGGACGACCAGTTTACATAGAAAGGTTGGGTCAGGTTGACTCTAGCAAGCTGATGCAAGTAACAACCATGGATCGCTATCTTAAGTACCACGTAAGAGAGTTTGAGAGGACACTCGTTGTTAAGTTCCCTGCTTGTTCGGTTGCAGCAAAGAAGCACATTGACCAAAGCACATCTATCTTGGATGTGCAGGGAGTGGGTCTCAAAAGTATGAACAAAATTGCCAGGGATCTCATCCAGCGTCTTCAGAAGATTGATGGTGAAAACTATCCTGAGACCCTGAACCGTATGTTCATCATAAATGCTGGTTCTGGATTTAGGCTGTTGTGGAACACTGTTAAGTCATTCCTAGATCCCAAGACCACCTCAAAAATCCATGTTCTAGGTAACAAATACCAGAGCAAATTGCTTGAAATCATTGATGCCAGTGAACTTCCAGAGTTTTTGGGTGGTACTTGTACTTGTGCAGACAAAGGTGGTTGTTTGCATTCAGACAAGGGGCCATGGAATGACTCAGAAATCTTGAAGATGGTTCAAAATGGCCAAGCAAAATGCAGGAGGAAAACCGTATCTGGGGTTGAGGAGAAAACCATCATTGAAGATGAATCAGCATATCAAAAGGTGGCATGCCATGTGCAAGGTTCACTGCCAAAAGGGGAGCATCCCGAACCCTGTGTTGCTCCAGAATCGCGGCTTTGTAGCTTAATAACATTTAATAATCTGTATGGTGGGGAAAAAGTCTCCTTTGTCCCAGTGATTGGCAAGCCAGTCAATGCATCTTGGAAAAAAACTGTACAAAATGATCCAGATTGCTTACGAGATAATGCCTGCAAGACTTCAAAGGGGTTTACAAATCGAATTACTAGTGGAATCATGGCCCTTGTTATGGGAGTTGTAACAATGATCCGCATGACACGGAACATACCAAGGAAAATCACTGAAGGTGCCTTGCATGGTAACTCAGTATATGGTGATGGGAATGTGATGAAAGCACCTGTAATTTCCATTGATGATCACATAGCCCTGATGAAGCGGATGGCTGAACTAGAAGAGAAAGTTAATATCCTTGCTATGAGACCTGCCATGCCACCTGAAATGGAGCAATTGCTGAATAATGCTCTAAATAGAGTCAGTGTACTGGAACAAGAGTTGGCTACTGCCAACAAGGCTCTTGATCATGCCCATACTCGACAAGTGGAGCTCCAAGCCCACATTGATAAAAAGAAGAAGAAGAAGTTGTTCCGCTGGTAA 1719 0.427 MQSFESFLSWQRKQWKANIEYSEDDKKTKLGSLKKVAINASSKFRHSLQKKGRRHSRVMSVAIEDELDAEELQAVDAFRQALILEELLPAKHDDHHMMLRFLRARKFDIEKTKQMWADMLQWRMEFGADTIMEDFDFKEIDEVLKYYPQGHHGVDKEGRPVYIERLGQVDSSKLMQVTTMDRYLKYHVREFERTLVVKFPACSVAAKKHIDQSTSILDVQGVGLKSMNKIARDLIQRLQKIDGENYPETLNRMFIINAGSGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCADKGGCLHSDKGPWNDSEILKMVQNGQAKCRRKTVSGVEEKTIIEDESAYQKVACHVQGSLPKGEHPEPCVAPESRLCSLITFNNLYGGEKVSFVPVIGKPVNASWKKTVQNDPDCLRDNACKTSKGFTNRITSGIMALVMGVVTMIRMTRNIPRKITEGALHGNSVYGDGNVMKAPVISIDDHIALMKRMAELEEKVNILAMRPAMPPEMEQLLNNALNRVSVLEQELATANKALDHAHTRQVELQAHIDKKKKKKLFRW* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0322 572 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 10 569 - -
Apr5g0322 572 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 10 569 - -
Apr5g0322 572 Gene3D - 56 126 - -
Apr5g0322 572 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 139 313 IPR001251 -
Apr5g0322 572 SUPERFAMILY CRAL/TRIO domain 139 335 IPR036865 -
Apr5g0322 572 SUPERFAMILY CRAL/TRIO N-terminal domain 65 135 IPR036273 -
Apr5g0322 572 SMART sec14_4 139 310 IPR001251 -
Apr5g0322 572 PRINTS Cellular retinaldehyde-binding protein signature 97 119 - -
Apr5g0322 572 PRINTS Cellular retinaldehyde-binding protein signature 266 285 - -
Apr5g0322 572 PRINTS Cellular retinaldehyde-binding protein signature 299 308 - -
Apr5g0322 572 Coils Coil 526 546 - -
Apr5g0322 572 Gene3D - 127 339 IPR036865 -
Apr5g0322 572 SMART CRAL_TRIO_N_2 94 119 IPR011074 -
Apr5g0322 572 CDD SEC14 140 308 IPR001251 -
Apr5g0322 572 Pfam CRAL/TRIO domain 145 307 IPR001251 -
Apr5g0322 572 Pfam CRAL/TRIO, N-terminal domain 91 118 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0322 Apr-Chr5 2912776 2923716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0322 73 304 Acyl Lipid Metabolism Gene Families AT5G47730 28.216 2.53e-21 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0322 - - gmx:100792335 825.083