Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0321 ATGGCTGGTGATTCTTTTGTAATTTCCAATGGGAATGGCAATGGTAACGCCATGTTGCAGCCGCATCCGCATCCGCAGAGGACTTACCAAGCAGTAGTGATTGCTACTAGAGATATGGGTATTTCTAAGGATGGAAAATTACCCTGGACATTACCCACTGATCTCAAATTTTTTGATGAGATCACTACGATAACATCCGATCCGGGGAAGAAGAATGCTGTTGTAATGGGTAGAAAAACATGGGAGAGTATCCCTCCCGAGGGCAGGCCTTTGCCTGGTCGCCTTAATGTTGTTCTGACTCGCTCTGGTAGCTTTGATATTGCAACAGTAGAGAATGTTGTTATATGTGGAAGTGTGTCTTCTGCTATGGAATTGTTGGCTGCTTCTCCTTATTGCCTGTCAATTGAGAAAGTGTTTATTACTGGAGGTGGTGAGATATTTAGAGAGGCTCTTAATGCACCTGGATGTGAAGCTGCCCATATTACAGAGATTGAGGCAAGCATTGAGTGTGATACTTTTATGCCTCGAATTGATACATCTGTATTTCAGCCGTGGTATTCATCATTTCCCTTGGAGGAAAACAACCTCCGCTATTCTTTCACCACTTATGTGCGTGTGAGGAGTTCTCCAGCGGAGTCCCTGAGTCAAAATGCTGATCCATTTAATGATAATAATTCAGATTCTCTAAAATTTGAAGTCAAGAAATTTTCTTTTCTTCCTAAAATGATTTTTGAGAGACATGAGGAGTTCAATTATCTTAGGTTGGTTCAAGAAATCATTTCTGAAGGTACAGCTAAGGATGATAGGACAGGAACTGGTACCTTGTCAAAATTTGGTTGCCAGATGAGATTTAATCTGCGCAGAAACTTTCCGCTTCTGACAACTAAGAAAGTATTTTGGCGAGGGGTTGTTGAAGAGCTTCTTTGGTTTGTCAGTGGCTCAACGAGTGCCAAGGTGCTGCAGGAAAAAGGCATTCACATATGGGATGGGAATGCATCAAGGGAGTACCTCGATAGCATTGGTTTGACAGAAAGAGAAGAGGGTGACTTAGGACCTGTTTATGGGTTTCAGTGGAGACACTTTGGAGCCAAGTATACTGACATGCATGCTGACTACTCCGAGCAAGGATTTGACCAGCTTTTAGATGTTATTGATAAGATAAAGCATAATCCAGACGATCGACGGATCATTCTCTCAGCGTGGAATCCATCCGATCTTAAATTGATGGCACTTCCACCCTGCCACATGTTTGCGCAGTTTTATGTAGCAAATGGGGAGTTGTCGTGTCAAATGTATCAACGATCTGCTGACATGGGCCTGGGTGTGCCATTTAATATTGCATCATATGCGCTCCTGACATGCATGATTGCTCATGTTTGTGACCTCGTTCCCGGTGATTTTATCCATGTTATTGGGGATGCCCATGTTTACCGCAATCATGTGAGACCTTTGCAGGAACAGCTCCAGAAGCAGCCAAAACCTTTTCCGATTTTGAAGATAAACCCGAAGAAGAAAGATATAGATTCTTTTGTGGCTGCTGATTTCAATCTCATAGGCTATGATCCTCACCAGAAGATAGAAATGAAGATGGCTGTTTAG 1599 0.4278 MAGDSFVISNGNGNGNAMLQPHPHPQRTYQAVVIATRDMGISKDGKLPWTLPTDLKFFDEITTITSDPGKKNAVVMGRKTWESIPPEGRPLPGRLNVVLTRSGSFDIATVENVVICGSVSSAMELLAASPYCLSIEKVFITGGGEIFREALNAPGCEAAHITEIEASIECDTFMPRIDTSVFQPWYSSFPLEENNLRYSFTTYVRVRSSPAESLSQNADPFNDNNSDSLKFEVKKFSFLPKMIFERHEEFNYLRLVQEIISEGTAKDDRTGTGTLSKFGCQMRFNLRRNFPLLTTKKVFWRGVVEELLWFVSGSTSAKVLQEKGIHIWDGNASREYLDSIGLTEREEGDLGPVYGFQWRHFGAKYTDMHADYSEQGFDQLLDVIDKIKHNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFIHVIGDAHVYRNHVRPLQEQLQKQPKPFPILKINPKKKDIDSFVAADFNLIGYDPHQKIEMKMAV* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0321 532 PIRSF DHFR-TS 13 532 IPR012262 GO:0004146|GO:0004799|GO:0006730
Apr5g0321 532 TIGRFAM thym_sym: thymidylate synthase 251 532 IPR000398 GO:0004799|GO:0006231
Apr5g0321 532 Pfam Thymidylate synthase 251 532 IPR023451 -
Apr5g0321 532 Pfam Dihydrofolate reductase 30 205 IPR001796 GO:0004146|GO:0046654
Apr5g0321 532 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 241 532 IPR036926 -
Apr5g0321 532 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 28 205 IPR001796 GO:0004146|GO:0046654
Apr5g0321 532 PANTHER THYMIDYLATE SYNTHASE 1 1 532 IPR045097 GO:0016741
Apr5g0321 532 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 232 532 IPR036926 -
Apr5g0321 532 CDD DHFR 31 204 IPR001796 GO:0004146|GO:0046654
Apr5g0321 532 Gene3D Dihydrofolate Reductase, subunit A 15 208 IPR024072 -
Apr5g0321 532 ProSitePatterns Thymidylate synthase active site. 394 422 IPR020940 GO:0004799|GO:0006231
Apr5g0321 532 CDD TS_Pyrimidine_HMase 252 485 IPR023451 -
Apr5g0321 532 PRINTS Thymidylate synthase family signature 290 311 IPR000398 GO:0004799|GO:0006231
Apr5g0321 532 PRINTS Thymidylate synthase family signature 383 402 IPR000398 GO:0004799|GO:0006231
Apr5g0321 532 PRINTS Thymidylate synthase family signature 409 424 IPR000398 GO:0004799|GO:0006231
Apr5g0321 532 PRINTS Thymidylate synthase family signature 427 453 IPR000398 GO:0004799|GO:0006231
Apr5g0321 532 PRINTS Thymidylate synthase family signature 465 482 IPR000398 GO:0004799|GO:0006231
Apr5g0321 532 Hamap Thymidylate synthase [thyA]. 249 532 IPR000398 GO:0004799|GO:0006231
Apr5g0321 532 SUPERFAMILY Dihydrofolate reductase-like 24 205 IPR024072 -
Apr5g0321 532 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 1 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0321 Apr-Chr5 2907690 2912889 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0321 K13998 - gmx:100786311 995.342