Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0301 ATGGCGGAAGAAGCGGTTTTAGGTTACCTAGAAAACAACGAGGAGATTGGTGACTCGGGTGAATTCGCTGCTGAACTTGGCATTGACCACAACGAGATCGTGAACGTGATAAAGAGTTTGCATGGGTTCAGATACGTGGATGCGCAAGACATTAAGCGAGAGACGTGGGTTTTGACAGATGAAGGGAAGACGTATGCTAGTGTAGGATCCCCTGAAGTTCAACTCTTTTTGGCAATACCGCAAGAGGGTATCACGAAAGATGAACTTCAGAAAAAGCTGGATCCATCTGCCTTCAAGATAGGCTGTGCCCAGGCTGCAAAGAACAAGTGGGTGGACATGGGAAAACAATTAATTTCTAGAAAGGTTCAACATGTGGATGACAAGGTCAAAGAACGGCTTCTTCAAATTCAACAGGGACAGAGCATTGGTTCAGACGAAATCAAAGCACTCAAAGCAAGAAAGCTTATTGTTCCACAGACATGGAAGGGTTACTCAGTGAAGAAAGGTCCTAATTATGCTCCAAAAAGAAAGAAAGTTGTCACTGATTTAACTCGAGATAATTTTCAGAGTGGTGAGTGGAAGGAATTAGAGTTCAAAGAGTACAATTATAGTGCTAAAGGTCAGCCTCTTGAGGGTGGTCATCTTCATCCATTGCTGAAGGTACGGGCTCAGCTGAAACAGATATTCCTTTGCATGGGGTTTGAGGAGATGCCAACAAATAATTTTGTTGAGAGCAGCTTCTGGAATTTTGATGCCTTGTTCCAGCCCCAACAACACCCAGCTAGGGATTCGCATGATACATTCTTTTTGGAAACTCCTTCGACAACAAAGAAATTGCCAGAAGATTATGTTCAGAGGGTGAAGCAAATTCATGAATATGGTGGTTATGGGTCTAGAGGATATGTATATGACTGGAAAAGAGAAGAAGCAAATAAAAACCTCCTGCGAACCCACACAACTGCTGTTTCCTCCAGGATGCTTTACCAATTGGCACAGAAGAAACCATTTTCTCCAAAAAAATATTTCTCTATAGATCGTGTTTTCAGAAATGAAGCTGTTGATCGAACACATCTTGCCGAATTCCACCAGATAGAAGGCCTTGTATGTGATCGAGGACTCACTCTGTGTGACTTAATAGGAGTCCTACATGATTTCTTCTCACGTTTAGGCATGACCAAGTTGAAGTTCAAACCAGCTTACAATCCATACACTGAACCTAGCATGGAGATTTTTAGTTATCATGAAGGCTTTAAAAAATGGGTAGAGGTAGGAAACTCTGGCATGTTCAGACCTGAAATGTTGCAGCCGATGGGACTTCCCGAAGATGTACAAGTTATTGCATGGGGCCTTTCCCTTGAAAGGCCAACGATGATATTATACGGGATAGATAACATCCGGGATCTCTTTGGACCCAAGGTGGATCTTGGGCTTATAAAGAAAAACCCGATATGTCGTCTTGGAATTGACTAA 1470 0.4259 MAEEAVLGYLENNEEIGDSGEFAAELGIDHNEIVNVIKSLHGFRYVDAQDIKRETWVLTDEGKTYASVGSPEVQLFLAIPQEGITKDELQKKLDPSAFKIGCAQAAKNKWVDMGKQLISRKVQHVDDKVKERLLQIQQGQSIGSDEIKALKARKLIVPQTWKGYSVKKGPNYAPKRKKVVTDLTRDNFQSGEWKELEFKEYNYSAKGQPLEGGHLHPLLKVRAQLKQIFLCMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLETPSTTKKLPEDYVQRVKQIHEYGGYGSRGYVYDWKREEANKNLLRTHTTAVSSRMLYQLAQKKPFSPKKYFSIDRVFRNEAVDRTHLAEFHQIEGLVCDRGLTLCDLIGVLHDFFSRLGMTKLKFKPAYNPYTEPSMEIFSYHEGFKKWVEVGNSGMFRPEMLQPMGLPEDVQVIAWGLSLERPTMILYGIDNIRDLFGPKVDLGLIKKNPICRLGID* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0301 489 TIGRFAM pheS: phenylalanine--tRNA ligase, alpha subunit 167 481 IPR004529 GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432
Apr5g0301 489 Pfam tRNA synthetases class II core domain (F) 201 475 IPR002319 GO:0000049|GO:0004812|GO:0005524|GO:0043039
Apr5g0301 489 Gene3D Bira Bifunctional Protein; Domain 2 216 488 IPR045864 -
Apr5g0301 489 CDD PheRS_alpha_core 216 474 - -
Apr5g0301 489 Gene3D - 71 125 - -
Apr5g0301 489 Gene3D - 58 156 - -
Apr5g0301 489 PANTHER PHENYLALANINE--TRNA LIGASE ALPHA SUBUNIT 3 487 - -
Apr5g0301 489 Pfam PheRS DNA binding domain 1 3 56 IPR040724 -
Apr5g0301 489 PANTHER PHENYLALANYL-TRNA SYNTHETASE 3 487 - -
Apr5g0301 489 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 220 471 IPR006195 -
Apr5g0301 489 Pfam PheRS DNA binding domain 3 70 125 IPR040725 -
Apr5g0301 489 Gene3D - 7 199 - -
Apr5g0301 489 SUPERFAMILY Class II aaRS and biotin synthetases 201 473 IPR045864 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0301 K01889 - gmx:100777795 947.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0301 5 2669493 2676387 Apr5g0301 5 2669493 2676387 ECH