Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0295 ATGCTCAAACATCCCAACTCTTCGTTCCTCCTTTCCCTTTTCCTGATCTTCACTGCAATATGCTTTGTAGATTCACAATCCTTCATCGGCGTCAACTACGGCCAGGTTGCCGACAACCTTCCGCCGCCGGAGGCCACGGCGAAGCTCCTCAAGTCTACGGCCATCGGAAAAGTCCGACTTTACGGCGCTGATCCAGGGATCATCAAGGCCCTGGCGAATTCCGGCATCGGAATAGTCATCGGCGCCGCCAACGGTGACATTCCAAGTCTAGCATCCGATCCCAACTCGGCGACTCAGTGGGTGAACGCGAACGTGTTGCCCTACTACCCTGCCAGCAACATCACTCTGATCACCGTCGGCAACGAGGTCATGACCTCCGGCGACCAGAGCCTCATCTCGCAGCTCCTCCCGGCGATTCAAAATGTCCAAAATGCCCTCAACTCGGTCTCACTCGGTGGCAAGATCAAGGTATCCACGGTGCATTCAATGGCCGTGTTGACTCAGTCGGATCCTCCATCTTCCGGGTTATTCGACCCAGCTCTCCAAAACACCCTTAAACAGTTGCTGGCGTTTCAGAGGGATAACAAATCTCCCTTCACCATCAACCCGTATCCGTTCTTCGCTTACCAGAGCGACCCGAGATCCGAAACACTAGCATTTTGCTTGTTCCAACCGAATTCGGGTCGGGTCGACAAGGGTAACGGGAAGCTTTACAACAACATGTTCGATGCTCAGGTTGATGCTGTGCACTCTGCTTTGAGCACTATGGGCTTTCAGGACATCGAGATTGTGGTTGCTGAGACAGGATGGCCCTCTCGTGGAGATAGCAATGAAGTAGGACCCAGTATTGAAAATGCCAAGGCCTATAATGGGAACCTCATTGCACACCTTAGATCATTAGTTGGGACTCCTTTGATGCCTGGAAAATCTGTGGACACATACATATTTGCACTCTATGACGAGGATTTGAAACCTGGACCAGGATCTGAGAGAGCATTTGGTTTGTTTAAAACTGATCTTACTTTGGCATATGATATTGGCCTAGACAAGTCTAGCTCTAGCCAGAAGACTCCACCAACCAAAGCTCCAGTTAGTTCAGGACCTAAAACTGTGACGCAATGGTGCATTCCTAAAGATGGAGTGACTGATTCTCAATTACAGGCAAATATAGATTATGTATGTGGAAGCCAAGGCATAGATTGTGGGGCAATTCAACAAGGAGGTGCTTGTTATGAACCTAACACAATAACATCTCATGCCGCTTTTGCCATGAATCTCTACTACCAGAAGGTTGGTAGAAATCCATGGAACTGTGATTTCTCTCAATCAGCAATTCTTACATCCCAAAATCCAAGTTACAATGCTTGCGTTTATCCCACTGGGAGTCCCTAA 1392 0.4899 MLKHPNSSFLLSLFLIFTAICFVDSQSFIGVNYGQVADNLPPPEATAKLLKSTAIGKVRLYGADPGIIKALANSGIGIVIGAANGDIPSLASDPNSATQWVNANVLPYYPASNITLITVGNEVMTSGDQSLISQLLPAIQNVQNALNSVSLGGKIKVSTVHSMAVLTQSDPPSSGLFDPALQNTLKQLLAFQRDNKSPFTINPYPFFAYQSDPRSETLAFCLFQPNSGRVDKGNGKLYNNMFDAQVDAVHSALSTMGFQDIEIVVAETGWPSRGDSNEVGPSIENAKAYNGNLIAHLRSLVGTPLMPGKSVDTYIFALYDEDLKPGPGSERAFGLFKTDLTLAYDIGLDKSSSSQKTPPTKAPVSSGPKTVTQWCIPKDGVTDSQLQANIDYVCGSQGIDCGAIQQGGACYEPNTITSHAAFAMNLYYQKVGRNPWNCDFSQSAILTSQNPSYNACVYPTGSP* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0295 463 Gene3D - 370 459 - -
Apr5g0295 463 SMART X8_cls 373 458 IPR012946 -
Apr5g0295 463 Pfam Glycosyl hydrolases family 17 29 346 IPR000490 GO:0004553|GO:0005975
Apr5g0295 463 Pfam X8 domain 373 444 IPR012946 -
Apr5g0295 463 ProSitePatterns Glycosyl hydrolases family 17 signature. 261 274 IPR000490 GO:0004553|GO:0005975
Apr5g0295 463 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 7 10 455 - -
Apr5g0295 463 SUPERFAMILY (Trans)glycosidases 29 347 IPR017853 -
Apr5g0295 463 Gene3D Glycosidases 28 356 - -
Apr5g0295 463 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 10 455 IPR044965 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0295 Apr-Chr5 2624979 2628722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0295 24 459 Miscellaneous Gene Families AT2G16230 67.661 0.0 615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0295 - - gmx:100778892 755.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0295 5 2624979 2628722 Apr5g0295 5 2624979 2628722 ECH