Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0288 ATGGTAGCTCAAGCTTTGTCAGTGCCTGCGAGTGCCAGTTTCACTATCTCTTCACGCAGGAGAAGCCCTTCCCACCTCGTATTTTCTCATAGAAACCCGTGTTCGAAAGCATCTTCCTTGCCAAACCCATATGGCCATTCATCAAAATTTGGTTTATCAAGTAAAAGTAGTGGCTTTCCCTTAAAACTTGATGAGAAAAATACTCATGATGCTAGTACAAGTTATGGTCCAATTGAAGGCAAGAAGGGCAATCCACCACTAACCCCAGCAGTTTTGACTCCCGGAGGACCTCTTGACCTCTCGTCTGTTTTGTTCAGGAATCGTATAATATTCATAGGGCAGCCGGTTAACTCACAAGTGGCTCAGCGAGTTATGTCGCAGCTTGTGACTCTGGCTACTATTGATGAAAATGCAGATATACTGGTATATATAAATTGCCCTGGGGGGAGCACATATTCAGTGTTGGCAATTTATGATTGCATGTCTTGGATAAAGCCCAAGGTTGGTACTGTATGTTTTGGAGTAGCTGCTAGCCAAGGAGCACTTCTCCTTGCAGGTGGGGAGAAAGGAATGCGCTATGCAATGCCAAATGCTCGTATAATGATACATCAACCACAGAGTGGATGTGGGGGTCATGTTGAAGATGTGAAACGCCAAGTGAATGAAGCTGTTCAATCTCGCCATAAAATAGACAAGATGTATAGTGCTTTTACTGGACAGCCATTAGAGAAGGTACAACAGTACACAGAGAGGGACCGTTTTCTGTCTGTTGCGGAGGCCTTGGAATTTGGTCTTATTGATGGTGTCCTGGAAACAGAGTATTGA 825 0.4436 MVAQALSVPASASFTISSRRRSPSHLVFSHRNPCSKASSLPNPYGHSSKFGLSSKSSGFPLKLDEKNTHDASTSYGPIEGKKGNPPLTPAVLTPGGPLDLSSVLFRNRIIFIGQPVNSQVAQRVMSQLVTLATIDENADILVYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNARIMIHQPQSGCGGHVEDVKRQVNEAVQSRHKIDKMYSAFTGQPLEKVQQYTERDRFLSVAEALEFGLIDGVLETEY* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0288 274 CDD S14_ClpP_2 99 269 IPR001907 GO:0004176|GO:0004252|GO:0006508
Apr5g0288 274 Pfam Clp protease 99 272 IPR023562 -
Apr5g0288 274 PRINTS Clp protease catalytic subunit P signature 99 114 IPR001907 GO:0004176|GO:0004252|GO:0006508
Apr5g0288 274 PRINTS Clp protease catalytic subunit P signature 139 159 IPR001907 GO:0004176|GO:0004252|GO:0006508
Apr5g0288 274 PRINTS Clp protease catalytic subunit P signature 170 187 IPR001907 GO:0004176|GO:0004252|GO:0006508
Apr5g0288 274 PRINTS Clp protease catalytic subunit P signature 191 210 IPR001907 GO:0004176|GO:0004252|GO:0006508
Apr5g0288 274 PRINTS Clp protease catalytic subunit P signature 248 267 IPR001907 GO:0004176|GO:0004252|GO:0006508
Apr5g0288 274 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 14 274 IPR023562 -
Apr5g0288 274 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 6, CHLOROPLASTIC 14 274 - -
Apr5g0288 274 SUPERFAMILY ClpP/crotonase 98 272 IPR029045 -
Apr5g0288 274 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 87 273 IPR001907 GO:0004176|GO:0004252|GO:0006508
Apr5g0288 274 ProSitePatterns Endopeptidase Clp histidine active site. 192 205 IPR033135 -
Apr5g0288 274 Gene3D - 93 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0288 Apr-Chr5 2548872 2552359 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0288 K01358 - gmx:100799710 503.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0288 5 2548872 2552359 Apr5g0288 5 2548872 2552359 ECH