Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0275 ATGCTATCTCCGATGGCTATCTCGGCGCACCTCTGTCGTCTTCCCGCGACTCGCACTGACCTCGCTTTACCGGAGACTCTCACCAGAATTCGCTGCCGGAAACCTTTCTCCGTCCGATGCTCCGGTGATTCTTCTTCACCGTCCGTTTCTGTGGATTCCGATTTCGATCCGAAGGTGTTTCGGAGGAACCTGACGAGGAGTAAGAATTATAACCGCAAAGGCTTTGGATACAAAGAGGAAACCCTCCAACTGATGAATCGCGAGTACACCAGTGACATAATTAAGACTTTGAAGGAAAATGGGAATGAGTATACATGGGGTACTGTCACGGTGAGGCTGGCTGAATCCTATGGATTCTGTTGGGGAGTTGAGAGAGCTGTTCAAATTGCTTATGAGGCCAGGAAACAGTTTCCTAATGAGACAATATGGCTTACCAATGAAATCATCCACAACCCCACTGTTAATAAGCGGCTAGAGGAGATGAATGTGCAGAATCTTCCTGTAGATGAAGGTAGAAAACAATTTGATGTAGTCAACAATGGTGATGTAGTCATATTGCCTGCTTTTGGAGCTGCAGTGGATGAGATGTTGACTTTGAGTGAGAAAAAGGTTCAAATCGTTGATACAACTTGCCCATGGGTTTCAAAGGTATGGAATACTGTTGAAAAGCACAAGAAAGGAGATTATACCTCCATAATTCATGGTAAATATGCCCATGAGGAAACTGTGGCAACTGCTTCTTTTGCTGGAAAGTATATAATTGTGAAGAATATGGCAGAGGCTGAATATGTTTGTGACTATATTCTTGGTGGTGAATTTAATGGATCCAGTTCAACCAAGGATGCCTTTTTAGAGAAATTTAAATATGCAGTTTCTGAGGGCTTTGATCCAGACAAAGACCTGGAGAAACTTGGCATTGCAAACCAGACAACAATGCTCAAGGGAGAGACGGAAGAGATTGGGAAACTAGTGGAGAGGACTATGATGCGCAAATTTGGTGTGGAAAATATCAACGAGCACTTCATAAGCTTCAACACAATTTGTGATGCTACTCAGGAGCGACAAGATGCTATGTACAAACTGGTGGAGCAGGATATGGATCTTATGTTAGTAGTTGGTGGATGGAACTCTAGCAATACATCGCATCTGCAAGAGATTGCTGAGGAACGTGGAATTCCTTCATATTGGATTGACAGTGAGCAAAGAATTGGTCCAGGAAACAGAATAGCTTACAAGTTGAACCATGGAGAGCTGGTGGAGAAAGAAAATTGGCTCCCAGAGGGTCCAATAACAATTGGTGTAACATCTGGTGCATCCACACCAGACAAGGTTGTTGAAGAAGTGCTTATCAAGGTCTTTGACTTGAAACGGGATGAAGCATTGCAACTTGCGTAA 1395 0.4358 MLSPMAISAHLCRLPATRTDLALPETLTRIRCRKPFSVRCSGDSSSPSVSVDSDFDPKVFRRNLTRSKNYNRKGFGYKEETLQLMNREYTSDIIKTLKENGNEYTWGTVTVRLAESYGFCWGVERAVQIAYEARKQFPNETIWLTNEIIHNPTVNKRLEEMNVQNLPVDEGRKQFDVVNNGDVVILPAFGAAVDEMLTLSEKKVQIVDTTCPWVSKVWNTVEKHKKGDYTSIIHGKYAHEETVATASFAGKYIIVKNMAEAEYVCDYILGGEFNGSSSTKDAFLEKFKYAVSEGFDPDKDLEKLGIANQTTMLKGETEEIGKLVERTMMRKFGVENINEHFISFNTICDATQERQDAMYKLVEQDMDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENWLPEGPITIGVTSGASTPDKVVEEVLIKVFDLKRDEALQLA* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0275 464 Gene3D - 120 210 - -
Apr5g0275 464 Gene3D - 345 463 - -
Apr5g0275 464 Hamap 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 109 456 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Apr5g0275 464 Pfam LytB protein 111 450 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Apr5g0275 464 PANTHER 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE, CHLOROPLASTIC 5 462 - -
Apr5g0275 464 TIGRFAM ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 111 451 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Apr5g0275 464 Gene3D - 211 344 - -
Apr5g0275 464 CDD lytB_ispH 111 449 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0275 K03527 - gmx:100818067 837.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0275 5 2402825 2406464 Apr5g0275 5 2402825 2406464 ECH