Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0270 ATGCCAATGAGGTCTCTGAGGGTAAGAGATGCTCTGGTATACCGTGAACATGTCGATGCAATAAAATCTGGTTTGGTGTCAAGCATCTTCACTTGCAATCAACTCGTTCACCTTTATTCCAACCATGGCCTTTTGCACGAGGCTCACAAACTGTTCGATGAAATGCCCCAGCCAAATGTATTCTCTTGGAATGCCATAATTATGGCTTACATAAAAGCACACAACTTGACTCAAGCACGAGCCCTTTTTGACTCTGCCTCTCGCAGAGATTTAGTTTCCTATAATTTAATGTTGTCAGCTTATGTTGGTGCTGATGGGTATGAGAATGAAGCACTTGATTTGTTTACTAGAATGCAATCTTCACGTGACACAATTGGGATTGATGACTTCACTCTCACTACCATGCTTAACCTTACTGCCAAACTACTCGTGGTGTGTTATGGGAAGCAGATGCATTCATATATGGTGAAAACTGCAAATGATTTAAGTAAGTTTGCTGTGAGTTCTCTCATAGACATGTACTCTAAATGTGGTTCCTTTTGTGAAGCATTCGATGTATTCAATGGTTGTGATGGGATGATAGACTTGGTTTCAAAGAATGCAATGGTTGCAGCTTGTTGTAGGGAAGGAAAGATGGACATGGCTTTAAATGTATTTTGGAAATATCCTGAATTAAATGATACCGTGTCTTGGAACACATTGATTGCAGGATATGCCCAAAATGGCTATATGGAGAAATCACTTACCTTGTTTGTTGAGATGATGGAAAATGGTATTGATTTCAGTGAACACGCTATATCAAGTGTTTTGAGTGCCTGCTCTGGTCTAAAATCATTGAAACTCGGCAAGTCTGTCCATGCTTGGGTGTTGAAAAATGGTTACAGTTCAAATCAATTTATTAGCAGTGGCATTGTCGACTTCTACTCTAAATGCGGGAATGTTAGATATGCAGATTCAGTGTATACAGAAATTGGGATTAAAAGCCCATTTGCAGCTGCTTCCTTGATTGCAGGCTATTCATCTCAAGGCAACATGACAGAAGCCCAAAGACTTTTTGATTCACTGTCAGAAAGAAACATTGTTGTCTGGACAGCTCTATGTTCAGGTTATGTCAAATCACAACAATGTGAGGCAGTCTTCAAACTTTTCAGGGAGTTTAGAACTAAAGAAGCACTAGTTCCTGATGCAATGATCATTATAAGTGTGCTTGGTGCCTGTACCACGCTAGCTGCTCTTTGTTTGGGAAAGCAAATTCATGCTTACATGTGGAGAATGAAACTTAAGATGAATGAAAAATTGCTGAGTGCTTTGGTTGATATGTACTCAAAATGTGGGAATATCACATATGCCGAGAAACTCTTCCAACTAGTCACTGATAGCGATAGAGATGCAATCTTATATAATGTCATGATAGCTGGTTATGCTCATCATGGCTTTGAAAATAAAGCGATTCAGCTTTTTCAGGAAATGTTGAAGAAAAGTGTCAAGCCGGATGCAGTCACTTTTGTTGCGCTTCTATCAGCTTGTCGACACCGTGGATTAGTAGAACAAGGAGAGGAATTTTTTATTTCCATGGAAGAAGATTACAGTGTATTGCCTGAAATTTACCACTATGCGTGTATGGTTGATATGTATGGAAGGGCTAATCAACTAGAAACGGCAGTAGAATTCATGAGGAAGATTCCCATACAGATAGATGCTACAATCTGGGGAGCATTTCTTAATGCTTGTCAGATGAGCAGTAATACTGCACTTGTCAAACAGGTAGGAGAGAACCTATTAAATGTTGAGGTAGATAACGGGTCTAGATATGTGCAATTGGCGAATGCCTATGCTTCCAGAGGGAAATGGGATGAGATGGGACAAATAAGAAAGAAAATGAGAGGGAACGAAGCTAAGAAGCTTGCTGGTTGCAGTTGGATATATGTGGAAAATGGTATTCATGTATTTACTTCTGGTGATACATCTCATTCAAAAGCAGATATAATATATTCAACTTTGGCATGCTTGAACGGAAAAATGCATTTATCTTTCGCAGAAATGAAGCGACTTTATGAAATTTAG 2064 0.3924 MPMRSLRVRDALVYREHVDAIKSGLVSSIFTCNQLVHLYSNHGLLHEAHKLFDEMPQPNVFSWNAIIMAYIKAHNLTQARALFDSASRRDLVSYNLMLSAYVGADGYENEALDLFTRMQSSRDTIGIDDFTLTTMLNLTAKLLVVCYGKQMHSYMVKTANDLSKFAVSSLIDMYSKCGSFCEAFDVFNGCDGMIDLVSKNAMVAACCREGKMDMALNVFWKYPELNDTVSWNTLIAGYAQNGYMEKSLTLFVEMMENGIDFSEHAISSVLSACSGLKSLKLGKSVHAWVLKNGYSSNQFISSGIVDFYSKCGNVRYADSVYTEIGIKSPFAAASLIAGYSSQGNMTEAQRLFDSLSERNIVVWTALCSGYVKSQQCEAVFKLFREFRTKEALVPDAMIIISVLGACTTLAALCLGKQIHAYMWRMKLKMNEKLLSALVDMYSKCGNITYAEKLFQLVTDSDRDAILYNVMIAGYAHHGFENKAIQLFQEMLKKSVKPDAVTFVALLSACRHRGLVEQGEEFFISMEEDYSVLPEIYHYACMVDMYGRANQLETAVEFMRKIPIQIDATIWGAFLNACQMSSNTALVKQVGENLLNVEVDNGSRYVQLANAYASRGKWDEMGQIRKKMRGNEAKKLAGCSWIYVENGIHVFTSGDTSHSKADIIYSTLACLNGKMHLSFAEMKRLYEI* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0270 687 Gene3D Tetratricopeptide repeat domain 411 514 IPR011990 GO:0005515
Apr5g0270 687 Gene3D Tetratricopeptide repeat domain 147 279 IPR011990 GO:0005515
Apr5g0270 687 Gene3D Tetratricopeptide repeat domain 15 143 IPR011990 GO:0005515
Apr5g0270 687 Gene3D Tetratricopeptide repeat domain 280 410 IPR011990 GO:0005515
Apr5g0270 687 PANTHER - 64 220 - -
Apr5g0270 687 PANTHER - 17 73 - -
Apr5g0270 687 PANTHER - 195 344 - -
Apr5g0270 687 PANTHER - 328 643 - -
Apr5g0270 687 Pfam PPR repeat 361 388 IPR002885 -
Apr5g0270 687 Pfam PPR repeat 334 360 IPR002885 -
Apr5g0270 687 Pfam PPR repeat 435 456 IPR002885 -
Apr5g0270 687 Pfam PPR repeat 198 220 IPR002885 -
Apr5g0270 687 Pfam PPR repeat 92 121 IPR002885 -
Apr5g0270 687 Pfam PPR repeat 30 56 IPR002885 -
Apr5g0270 687 Pfam PPR repeat 61 85 IPR002885 -
Apr5g0270 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 362 IPR002885 -
Apr5g0270 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 497 IPR002885 -
Apr5g0270 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 90 121 IPR002885 -
Apr5g0270 687 Pfam E motif 590 641 IPR046848 -
Apr5g0270 687 TIGRFAM PPR: pentatricopeptide repeat domain 229 259 IPR002885 -
Apr5g0270 687 TIGRFAM PPR: pentatricopeptide repeat domain 466 499 IPR002885 -
Apr5g0270 687 TIGRFAM PPR: pentatricopeptide repeat domain 30 55 IPR002885 -
Apr5g0270 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 28 62 IPR002885 -
Apr5g0270 687 Pfam PPR repeat family 463 509 IPR002885 -
Apr5g0270 687 Pfam PPR repeat family 227 273 IPR002885 -
Apr5g0270 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Apr5g0270 687 Gene3D Tetratricopeptide repeat domain 515 678 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0270 Apr-Chr5 2358435 2361569 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0270 65 667 Glycoside Hydrolase AT3G49170 32.673 2.14e-99 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0270 - - gmx:100803987 1174.46