Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0264 ATGGCGATTCAACTCCTCAAACGCTTACACGAACCTCTGATTCTGTGGCCGAAACCTCTGCCACTCATCTCTTACTTTTGTTCAAACGAAAGCTCTGAAAGTGGAATTGTAAGAAGCGTGGTTTCAATCCTCACCCATCAACGTTCAAAGTCTCGTTGGAGCACTCTCCGATCGGCGTGCCCCAACGGCATCGACCCTTTTGAGTTTTCCCAAATTAGCATCAACCTCAAGAACAAACCCCAACTCGCTCTTCGCTTCTTCCACTGGACCAAATCCAATTCCCTCTGCCATCACAACCTCTCCTCTTACTCCACCATCATCCACATCCTCGCACGTGCCCGCCTCAGTTCACACGCTTACGATGTCATCCGAACTGCCATTCGGGCTTCTCAGCTAAACGAGGATGAAGGTTGTCGTTTTGACTCGTCCCCTTTGAAGCTCTTCGAGACCCTTGTTAAGAGTTACCGAGATTCTGGGTCTGCTCCCTTTGTGTTTGATTTGTTAATTAAAGCGTGTTTGGATTCTAAAAAGGTTGACCCTTCTATTGAAATAGTTAGAATGCTGCTCTCTCGCGGGATTAGCCCTAAAGTTAGCACCTTGAATTGTTTGATTCCTAGGGTTTGTCAAAGCCGAGGGGTGGATGCAGGTTATGCAATTTACCGTGAGTTATTCCGGTTAGATGAAGAAAAAAAGGAAATTTCGAAAAGGAGTTTTGATTTTAGAGTTACCCCTAATGTGCATACGTATAATGAATTGATGTTGTGTTGTTATCAAGATGGTTGGATGGAAAAGGTAGAGGAAATTTGGAATGAAATGGGTGAAATGAGGTGTAAACCAAATGCTTACAGCTATAGTGTGTTGATGGCTGCTTTTTGCGAGGAAGGGAGGTTGGGAGATGCTGACAAGTTGTGGGAAGAGATGAGAAATGAGGAAATGGAGCCTGATGTGGTTTGTTATAACACTATGATTGGCGGGTTTTGCAACATTGGAGATGTTGGAAGGGCTGAAGAATTTTTCAAGGAAATGGCATTGGCTGGTGTTGAAAGCACTGCTGCAACTTATGAGCATCTTGTCAAGGGGTATTGCAATGCTGGTGATGTTGATTCTGCTGTTCTTGTTTACAAGGATATGTCTAGGAGGGATTTCAGACCTGATGCTTCAACCCTTGATGTGATGATTAGGTTGCTTTGTGATAAGGGTAGAGTTCAGGAAGCACTGGAATTTTTTAGGTGTGCAGCTGGTAAGTTTGACTTGTTTCCAAGGGAAAAGAGTTATGAGGCCTTGATAAAGGGGTTATGTTTGGAAGGGAGGATGGAAGAAGCGTTGAAGATTCAGGCAGAAATGGTTGGAAAGGGGTTTCATCTGAATTCTGAAATATATGGTGCTTTTATTGATGGATACATTACACAAGGGAACGAGGAACTGGCAGTAGCTTTGAGGAAAGAAATGCTCCAAACTCAAATGCCGAGCTAA 1473 0.4386 MAIQLLKRLHEPLILWPKPLPLISYFCSNESSESGIVRSVVSILTHQRSKSRWSTLRSACPNGIDPFEFSQISINLKNKPQLALRFFHWTKSNSLCHHNLSSYSTIIHILARARLSSHAYDVIRTAIRASQLNEDEGCRFDSSPLKLFETLVKSYRDSGSAPFVFDLLIKACLDSKKVDPSIEIVRMLLSRGISPKVSTLNCLIPRVCQSRGVDAGYAIYRELFRLDEEKKEISKRSFDFRVTPNVHTYNELMLCCYQDGWMEKVEEIWNEMGEMRCKPNAYSYSVLMAAFCEEGRLGDADKLWEEMRNEEMEPDVVCYNTMIGGFCNIGDVGRAEEFFKEMALAGVESTAATYEHLVKGYCNAGDVDSAVLVYKDMSRRDFRPDASTLDVMIRLLCDKGRVQEALEFFRCAAGKFDLFPREKSYEALIKGLCLEGRMEEALKIQAEMVGKGFHLNSEIYGAFIDGYITQGNEELAVALRKEMLQTQMPS* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0264 490 Pfam PPR repeat 424 453 IPR002885 -
Apr5g0264 490 Pfam PPR repeat 390 410 IPR002885 -
Apr5g0264 490 Pfam PPR repeat 459 484 IPR002885 -
Apr5g0264 490 Pfam PPR repeat family 314 363 IPR002885 -
Apr5g0264 490 Pfam PPR repeat family 244 292 IPR002885 -
Apr5g0264 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Apr5g0264 490 Gene3D Tetratricopeptide repeat domain 307 403 IPR011990 GO:0005515
Apr5g0264 490 SUPERFAMILY HCP-like 249 485 - -
Apr5g0264 490 TIGRFAM PPR: pentatricopeptide repeat domain 424 456 IPR002885 -
Apr5g0264 490 TIGRFAM PPR: pentatricopeptide repeat domain 247 281 IPR002885 -
Apr5g0264 490 TIGRFAM PPR: pentatricopeptide repeat domain 282 316 IPR002885 -
Apr5g0264 490 TIGRFAM PPR: pentatricopeptide repeat domain 353 386 IPR002885 -
Apr5g0264 490 TIGRFAM PPR: pentatricopeptide repeat domain 317 348 IPR002885 -
Apr5g0264 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Apr5g0264 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 420 IPR002885 -
Apr5g0264 490 Gene3D Tetratricopeptide repeat domain 411 488 IPR011990 GO:0005515
Apr5g0264 490 Gene3D Tetratricopeptide repeat domain 73 222 IPR011990 GO:0005515
Apr5g0264 490 Gene3D Tetratricopeptide repeat domain 223 306 IPR011990 GO:0005515
Apr5g0264 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Apr5g0264 490 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 5 487 - -
Apr5g0264 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Apr5g0264 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Apr5g0264 490 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 5 487 - -
Apr5g0264 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0264 72 484 Glycosyltransferase AT1G05670 26.004 3.59e-42 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0264 - - gmx:100809831 766.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0264 5 2338734 2340206 Apr5g0264 5 2338734 2340206 ECH