Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0260 ATGGCTGAGGTATACACTGTGAAGGTGGAGGAGGCAAGCCCAGCAACTCATGAAAAGCCATCAGCAGGTCCTGTGTATAGATGCATTTATGCCAAAGATGGTTTAATGGAGTTGCCTTCTCATTTAGATTCTCCATGGGACTTCCTCAGGGACACTACGAGGAGGTTCCCCAGCAAGCCAATGCTGGGTCGACGTCAAAAAACCGATTCAAAGGGGGGTCCCTATGAATGGATCACGTATGAAGAGGCTTATGATGCTGCCATCCGAATGGGTTCCGCCATGAGGAACAGTGGTGTCAATCCTGCTTGCAATGGCTATGCAGTAACATATGTCCCACTATATGACACCTTGGGTTCTAATGCTGTGGAGTTTATCATAAACCATGGTGAAGTTTCAATAGCATTTGTGCAGGATAACAAGATTCCTTCTGTTTTGTCATGTCTTGATAGGTGTTCAACTCTTAAGACTATTGTGAGTTTTGGTAATATTTCAACCACACAAAAGAATGAAGCTGAGGAACTTGGTGCATCTTGCTTTTCATGGGGAGAATTTCTCCAGTTGGGAAATCTGGATTTGGACCTTCCATTAAAAAGTAAGACTAACATCTGCACAATCATGTACACAAGTGGAACAACAGGCGAACCCAAAGGGGTCATTATTAAGAATGAGGCTTTCATGGCTGAAGTGTTGTCTATTGACCAAATACTTAATTTAACTGACAAAGTGGGAACAGAAGACGATGTATACTTCTCTTTTCTTCCTCTTGCTCATGTATATGACCAGATAATGGAGACCTATTGCATCTACAAGGGCTCCTCAATTGGATTTTGGCAAGGCGATATCAGGTTCTTAATGGAAGATGTTCAGGCACTGAAACCAACTATATTCTGTGGCGTTCCTAGAGTTTATGACCGTGTTTATGCTGGTATCAACAGCAAAATCTCATCAGGAGGAACACTGCAAAGAACACTGTTTCAGTATGCATATAACTACAAGTTGGGATATCTGGAGAAGGGTCTTCCCCAAGAAAAAGCAGCACCTATGTTTGATAGGCTTGTATTTGATAAGATAAAACAAGCATTAGGTGGACAAATTCGTCTCTTGTTATCAGGAGCTGCTCCTTTGCCTAGGCACGTGGAGGAGTTTTTGAGGGTCACCTTTGGAGCTACTTTGTCACAAGGATATGGTCTTACCGAAAGTTGTGGCGGGTGTTTCACTTCAATAAGCAATGTGTTTTCTATGATGGGAACAGTTGGAGTCCCTATGACAACCATTGAGGCCAGGCTTGAATCTGTGCCAGAGATGGGATATGATGCACTCTCCAGTGAAGCCCGTGGAGAAATTTGCCTGAGAGGGAATACCTTATTCTCCGGTTACCACAGGCGTCAAGATCTTACTGAAGAGGTTCTGGTTGATGGTTGGTTTCATACAGGTGACATTGGAGAATGGCAGCCAAATGGATCCATGAAAATTATAGACAGAAAAAAGAATATCTTTAAATTGTCTCAAGGAGAATATGTTGCTGTGGAGAATATTGAAAACAAGTATTTGCGGTGCCCCCTTATAACATCGATTTGGGTCTATGGAAACAGTTTTGAATCTTTTCTGGTGGCAGTGGTGGTCCCTGAAAGACAGGTCCTTGAGGATTGGGCAGTGAAGCATAACTCTACAGATGATTTCAAATCTGTGTGTAAAAATCTGAAGGCAAGAAAATACATTTTGGATGAGCTCAACAGCACTGGTCAGAAACACCAACTTAAAGGCTTTGAGCTGCTAAAAGCAGTTCATTTGGAACCAAATCCCTTTGACATGGAGAGAGATCTAATAACTCCAACATTCAAATTGAAGAGACCGCAATTGCTTAAGTACTATAAGGACAATATTGATCAACTATACAAGGAAGTGAAGACAACGATAGTGTGA 1923 0.4212 MAEVYTVKVEEASPATHEKPSAGPVYRCIYAKDGLMELPSHLDSPWDFLRDTTRRFPSKPMLGRRQKTDSKGGPYEWITYEEAYDAAIRMGSAMRNSGVNPACNGYAVTYVPLYDTLGSNAVEFIINHGEVSIAFVQDNKIPSVLSCLDRCSTLKTIVSFGNISTTQKNEAEELGASCFSWGEFLQLGNLDLDLPLKSKTNICTIMYTSGTTGEPKGVIIKNEAFMAEVLSIDQILNLTDKVGTEDDVYFSFLPLAHVYDQIMETYCIYKGSSIGFWQGDIRFLMEDVQALKPTIFCGVPRVYDRVYAGINSKISSGGTLQRTLFQYAYNYKLGYLEKGLPQEKAAPMFDRLVFDKIKQALGGQIRLLLSGAAPLPRHVEEFLRVTFGATLSQGYGLTESCGGCFTSISNVFSMMGTVGVPMTTIEARLESVPEMGYDALSSEARGEICLRGNTLFSGYHRRQDLTEEVLVDGWFHTGDIGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENKYLRCPLITSIWVYGNSFESFLVAVVVPERQVLEDWAVKHNSTDDFKSVCKNLKARKYILDELNSTGQKHQLKGFELLKAVHLEPNPFDMERDLITPTFKLKRPQLLKYYKDNIDQLYKEVKTTIV* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0260 640 CDD LC-FACS_euk 73 633 IPR045311 GO:0004467|GO:0006631
Apr5g0260 640 ProSitePatterns Putative AMP-binding domain signature. 205 216 IPR020845 -
Apr5g0260 640 Pfam AMP-binding enzyme C-terminal domain 512 563 IPR025110 -
Apr5g0260 640 SUPERFAMILY Acetyl-CoA synthetase-like 39 634 - -
Apr5g0260 640 Gene3D - 35 494 IPR042099 -
Apr5g0260 640 PANTHER LONG-CHAIN FATTY ACYL COA LIGASE 2 636 - -
Apr5g0260 640 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 2 636 - -
Apr5g0260 640 Pfam AMP-binding enzyme 102 502 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0260 Apr-Chr5 2312411 2318763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0260 5 635 Acyl Lipid Metabolism Gene Families AT4G23850 53.374 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0260 K01897 - gmx:100790068 1167.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0260 5 2312411 2318763 Apr5g0260 5 2312411 2318763 ECH