Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0259 ATGAATATGTGGAAGAAGATGAATTTTCAAGAACAAGATGCAGTTCAATTGATCAATTCAGATTTCAGGGACCTGAGTCTTGCTGCTAATAAACTTGCCCAACATGCCATCAAACTCGGTGGCCTTGGCTTTGGAGCCTCTTTTTTCGGATTGATTGCTGCCATTGCTGCCGTTTATTTGTTGGTTTTGGATCGTACAAACTGGAGGACAAATATTCTCACAGCACTACTCATTCCATACATTTTCTTCAGCTTGCCGTCCTTGATTTTTGCCGTCTTCAGGGGAGAAATTGGAAGATGGATTGCTCTTATTGCTGTAGTATTGCGGCTTTTCTTTCCAAGTCGCTTCCCCGATTGGCTAGAAATGCCTGGTTCTTTGATTCTTCTAATTGTTGTGGCTCCTAGTCTTTTAGCAGACACCTTTAGAGGAAACATTGTTGGGGTGATAGTATGCCTTATAATTGCATGTTATTTGCTACAAGAACACATTCGGGCATCTGGGGGCTTCAGAAACTCCTTCACTAGAGCCCATGGCATATCAAATTCCGTTGGCATAATAATTCTGTTGGTATATCCTGTTTGGGCATTGGTGGTCTGTCTTTTATAG 606 0.4191 MNMWKKMNFQEQDAVQLINSDFRDLSLAANKLAQHAIKLGGLGFGASFFGLIAAIAAVYLLVLDRTNWRTNILTALLIPYIFFSLPSLIFAVFRGEIGRWIALIAVVLRLFFPSRFPDWLEMPGSLILLIVVAPSLLADTFRGNIVGVIVCLIIACYLLQEHIRASGGFRNSFTRAHGISNSVGIIILLVYPVWALVVCLL* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0259 201 Pfam Cold acclimation protein WCOR413 10 188 IPR008892 GO:0016021
Apr5g0259 201 PANTHER COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 1-RELATED 4 200 - -
Apr5g0259 201 PANTHER COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 2 4 200 IPR008892 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0259 Apr-Chr5 2309549 2312162 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0259 - - gmx:100811430 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0259 5 2309549 2312162 Apr5g0259 5 2309549 2312162 ECH