Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0256 ATGAAAAACGCAAACGGTGGCGCCATGTTGATAGAGCAAAATACAAACACCTTACACAGACCCAAATTTGGTGCCTTATTGCACTCCGATCCGTCGTCGTTTTACTCCCCTAACCACGATGATGAAGAGTTCTCTCATAACCGCCTCAGCAACGCTTCAGCAAACTATGGCGATAGTAGCAGCACACCCACCACAAGCAGCAACAATGCTTCTCCCTACATGATGTCGCCATGGAACCAAGCTTCTTCTCCTTACAACAAGTCTCCGTGGTTATTACCCTCACCCGCAATAAACCTCTTCCACCACAATCATGATGATAACAATTACTTCCCTCAAAATGGCCTCATAGGATCGCTGGTTCGTGAAGAGGGTCATGTATATTCTTTAGCGGTTTCAGGGGACTTGTTATATACAGGTTCCGATAGCAAAAACATAAGGGTGTGGAAGGGTTTCAAGGATTACACGGGTTTCAAATCGAGCAGTGGTTTGGTCAAAACCATAGTAATCTCCGGCGAGAAAATCTTCACCGGTCATCAAGACGGGAAGATCAGAGTGTGGAGGGTTTCTTCGAAGAATCCGCGGAGCCATAAACGCATTGGAAGCTTACCCACTTTCAAAGAGTACGTGAAGTGTTCGATGAATCCGAAGAACTACGTGGAAGTCCGGCGACACCGGAACGCGGTGAAGGTGAAGCATTTCGACGCCGTTTCGAGCCTGAGCTTGGACGAGGAGGAAGGGTTGTTGTATTCGGGGTCGTGGGACAAAACGTTCAAGGTTTGGCGCGTGGCGGATTCGAAGTGCATGGAATCCATGAACGCGCATGACGATGCCGTGAACGCGGTGGTGGCGGCGTTTCGCGGTTACGTGTTCACGGGGTCCGCGGACGGGACGGTGAAGATGTGGAGGAGGGAGATCGTGGGGAAGAAAATAAAGCACGTGTTGGAACGGGTTTTGCTGAAGCAAGAGAACGCCGTTACGGCGCTGGCGGTTAACCGTTTATCGACGGTGGTTTATTGCGGATCTTCCGACGGTTTGGTGAATTTCTGGGAGAGAGACCAAAAGGGTAGTCTCTCTCACGGTGGGGTTCTGAAGGGGCACAAACTCGCCGTTCTCTGCCTCGCCACGGCGGGGAACCTCGTGTTCAGTGGCTCCGCCGACAAGAATGTTTGGGTGTGGAAGCGTGACGAGAGTGGAAACCACACGTGCCTTTCGGTTCTCACGGGTCACACCGGCCCTGTAAAGTGCATAGCCGTTGAAGAAGAAGAATCGCAAGAGGAAGATGTTCACAATGAGAGCGATCAACGGTGGATTGTTTACACCGGGAGCTTGGATAAGGCAGTGAAAGTGTGGCGCGTGTCAGAACACGCGCCGGAGTTGCGCATGATTCAAGGCTGGGCCACACCAAGTCATGGTAATTACAATAACAATGGCATGGGTGGTGAGTACCAAAACAGGAATACAAGGGAGTTGCAACCTAAAATTTAG 1485 0.5091 MKNANGGAMLIEQNTNTLHRPKFGALLHSDPSSFYSPNHDDEEFSHNRLSNASANYGDSSSTPTTSSNNASPYMMSPWNQASSPYNKSPWLLPSPAINLFHHNHDDNNYFPQNGLIGSLVREEGHVYSLAVSGDLLYTGSDSKNIRVWKGFKDYTGFKSSSGLVKTIVISGEKIFTGHQDGKIRVWRVSSKNPRSHKRIGSLPTFKEYVKCSMNPKNYVEVRRHRNAVKVKHFDAVSSLSLDEEEGLLYSGSWDKTFKVWRVADSKCMESMNAHDDAVNAVVAAFRGYVFTGSADGTVKMWRREIVGKKIKHVLERVLLKQENAVTALAVNRLSTVVYCGSSDGLVNFWERDQKGSLSHGGVLKGHKLAVLCLATAGNLVFSGSADKNVWVWKRDESGNHTCLSVLTGHTGPVKCIAVEEEESQEEDVHNESDQRWIVYTGSLDKAVKVWRVSEHAPELRMIQGWATPSHGNYNNNGMGGEYQNRNTRELQPKI* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0256 494 MobiDBLite consensus disorder prediction 475 494 - -
Apr5g0256 494 PANTHER EN/SPM-LIKE TRANSPOSON PROTEIN-LIKE 11 467 - -
Apr5g0256 494 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 301 IPR001680 GO:0005515
Apr5g0256 494 MobiDBLite consensus disorder prediction 50 73 - -
Apr5g0256 494 Pfam WD domain, G-beta repeat 232 260 IPR001680 GO:0005515
Apr5g0256 494 Pfam WD domain, G-beta repeat 266 301 IPR001680 GO:0005515
Apr5g0256 494 Pfam WD domain, G-beta repeat 361 393 IPR001680 GO:0005515
Apr5g0256 494 Pfam WD domain, G-beta repeat 401 450 IPR001680 GO:0005515
Apr5g0256 494 Pfam WD domain, G-beta repeat 123 149 IPR001680 GO:0005515
Apr5g0256 494 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 270 IPR001680 GO:0005515
Apr5g0256 494 CDD WD40 123 451 - -
Apr5g0256 494 ProSiteProfiles Trp-Asp (WD) repeats profile. 363 393 IPR001680 GO:0005515
Apr5g0256 494 SMART WD40_4 311 350 IPR001680 GO:0005515
Apr5g0256 494 SMART WD40_4 399 451 IPR001680 GO:0005515
Apr5g0256 494 SMART WD40_4 150 187 IPR001680 GO:0005515
Apr5g0256 494 SMART WD40_4 264 302 IPR001680 GO:0005515
Apr5g0256 494 SMART WD40_4 356 393 IPR001680 GO:0005515
Apr5g0256 494 SMART WD40_4 226 261 IPR001680 GO:0005515
Apr5g0256 494 SMART WD40_4 112 149 IPR001680 GO:0005515
Apr5g0256 494 Gene3D - 110 212 IPR015943 GO:0005515
Apr5g0256 494 Gene3D - 310 471 IPR015943 GO:0005515
Apr5g0256 494 Gene3D - 217 309 IPR015943 GO:0005515
Apr5g0256 494 SUPERFAMILY WD40 repeat-like 116 458 IPR036322 GO:0005515
Apr5g0256 494 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 229 262 - -
Apr5g0256 494 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 11 467 IPR045182 -
Apr5g0256 494 PRINTS G protein beta WD-40 repeat signature 248 262 IPR020472 -
Apr5g0256 494 PRINTS G protein beta WD-40 repeat signature 289 303 IPR020472 -
Apr5g0256 494 PRINTS G protein beta WD-40 repeat signature 438 452 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0256 Apr-Chr5 2281123 2283355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0256 168 393 Acyl Lipid Metabolism Gene Families AT3G18860 26.613 1.60e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0256 - - gmx:100807706 709.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0256 5 2281123 2283355 Apr5g0256 5 2281123 2283355 ECH