LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr5g0255	ATGGCTTCGCTTCTGAAAAAACTGCGTCCTGGGGTGCCTTCAGTTCATGATGATGGCGGTGATTACAGCTTTGAGTATTCCTTTGCTGAGGAATACAAAGGTCCTCCCGTTAGCTACTCTATTCCAGAAGCACTTCCTTTTAGCCTTCACCAAATCCCAGTTGCCCCTCTTGCTCCTTCTCCTCCTCATCACTTCTCAGTCCCAGTTATTCAACCCTTCAGAAAAACCAATGTAGAATCTGTTTCAACTGCAAGCTCAAGTTATGCTTCTCATGATGAGATAGTTTCATGCGAAGAAGAGGATCATGATGATGAACCTTTTAGTCCAAGACATGTGAAACGGCCTTCTGTTGTGACCTTTCGTGATCCCAAGTCAAATGAGATTGTGCATGAGGTAGAGTTTGTCGATGTTGATGTTGATTCTCTTGGTGGAGAAAGGAGTACGAGTAAGAGTAGCAGTAGCAGTACCCTTGTGAGGCCTCGTGCTGTGAGGAATGGGAAGAAAGGGTCGTGCTATCGATGCCTTAAAGGGAATCGTTTTACTGAGAGGGAGGTTTGCATTGTTTGCAGTGCCAAGTATTGCAGAAACTGTGTGCTTAGAGCAATGGGGTCCATGCCTCAAGGTAGAAAGTGTGTTACTTGCATTGGTTATAGAATTGATGAGAGCAAGAGGGGAAAGCTTGGGAAATTTTCTAGGATGCTAAAACGCTTGTTGTCTGAGTTGGAAGTGAAACAAATCATGAAAGATGAAATGTTTTGTGAGGCAAATCAAATACCAGCAGAACATGTTAGAGTGAATGGAGAACCTCTTGATTGGGATCAGCTCATGTTGCTCCTCACCTGTTCAAACCCACCAAAAGGATTGAAACCTGGTTTCTTCTGGTATGATAAAGCATCTGGATTTTGGGGAAAGGAAGGTCAACGGCCGTGTCAAATTATCAGCCCCCAGTTGGAGATTGGGGGTCACTTGCAGAGAAATGCAAGTGGTGGAAAGACAAATGTAACTATAAATGGTCGAGCTATTACTAAAGAAGAGCTTTTGATTCTCAAGTGGGCAGGAGTGCCATGTGAAGGAACAATTGATTTTTGGGTAACTTCTGATGGATCATACATGGAAGAGGGACAGAGGAATGTCAAGGGGCGTATATGGGATAAGTCTCTAGTGAAGCTAGCTTCTATACTTCTGTCACTGCCAGTTCCTTCTAGCACTGACATTGCTGCTGGAGAAGGACAAAATAGAGTTAACCATTACAACCTTCAACACAAAACGCTTCATAAATTTCTACTTGTTGGGTCTGTCAAGTCTGGAACATGTACCATATTTAAACAGGCCAAGCTTCTATATAATGTTCCTTTCTCAGAAAATGAGCGTCAAAACATCAAGTTGGTAATTCAAAGCAACTTGTATAAGTACCTTGGTATACTGCTGGAGGCACGAGAAATATTTGAAGAGAGTTTGTGTCAGAACAAGAACCGATATCATGTTGATGAATCAACTTCATCAGCGATTACTGAAGAGATTATGGACCCAACAATCTATTCCATTGGCCCAAGACTGAAAGCTTTCTCAGAATGGCTACTCAAATACATGGTGTCAGGTAACTTGGATGCAATATTTCCAGCTGCTACTCGTGAATATGCACCATTGGTTGAGGAACTGTGGAGGGATTCAGCCATTCAGGCCACATATAACAGGAGAAATGAAATAAGATTGCTACCTAAAAGTGCCAGTTATTTTTTAGAGAGGGCTGTTGAAATTTCCAGGATAGACTACGAACCATTGGACATGGACATCTTGTATGCTGAGGGGTTGACCTTATCCAATGGCCTTACTTCAATGGAATTTTCATATCCTGTGTCAGGTCAAGAGGACTCTTTGGACCCTGAGTATCAACATGATCCTTCTCTCAGGTACCAACTCATCAGAGTACATCCAAAAAGCCTTGGAATGAAGTGCAAGTGGTTGGACATGTTTGAAGACACCGATGTGGTCTTATTTTCTGTTGCCTTAACTGACTATGATGAGTACACAATAGACAATAATGGAGTTGCTACCAACAAAATTTTAGTAGCCAAGCATCTCTTTGAAAACATCATCACTCATAGAATCTTCAACAACAAGAAATTCCTGTTAATATTAACCAAGTTTGATCTACTTGAGAAAAAGATTGAACGGGTACCTCTAACAAAATGTGAATGGTTTAGTGACTTCCATCCAGTTATTAGCCACAATCACAAAAAGGCTAGTATTGGTAAACATAGCAATCACCCTCCATTAGCTCAACGTGCTTTTCAATACATTGCTATGAAGTTTAAGAGATTATTCAATTCTTTTACTGGCCAAAAACTGTTTGTTTCAATGGTTTCTGGGTTGGAACCTGGTAGTGTTGATGAAGCTCTCAGATATGCTAGAGAGGTTATGGCTTGGGAAAAATGGGATCCATTCTTGAGAAATGAGAAGTCTGAGATAACATCCACAACCATTGAGGCAAGTTCTGATGAAAAATATACTCACTCTCCACCCTCCTAG	2529	0.414	MASLLKKLRPGVPSVHDDGGDYSFEYSFAEEYKGPPVSYSIPEALPFSLHQIPVAPLAPSPPHHFSVPVIQPFRKTNVESVSTASSSYASHDEIVSCEEEDHDDEPFSPRHVKRPSVVTFRDPKSNEIVHEVEFVDVDVDSLGGERSTSKSSSSSTLVRPRAVRNGKKGSCYRCLKGNRFTEREVCIVCSAKYCRNCVLRAMGSMPQGRKCVTCIGYRIDESKRGKLGKFSRMLKRLLSELEVKQIMKDEMFCEANQIPAEHVRVNGEPLDWDQLMLLLTCSNPPKGLKPGFFWYDKASGFWGKEGQRPCQIISPQLEIGGHLQRNASGGKTNVTINGRAITKEELLILKWAGVPCEGTIDFWVTSDGSYMEEGQRNVKGRIWDKSLVKLASILLSLPVPSSTDIAAGEGQNRVNHYNLQHKTLHKFLLVGSVKSGTCTIFKQAKLLYNVPFSENERQNIKLVIQSNLYKYLGILLEAREIFEESLCQNKNRYHVDESTSSAITEEIMDPTIYSIGPRLKAFSEWLLKYMVSGNLDAIFPAATREYAPLVEELWRDSAIQATYNRRNEIRLLPKSASYFLERAVEISRIDYEPLDMDILYAEGLTLSNGLTSMEFSYPVSGQEDSLDPEYQHDPSLRYQLIRVHPKSLGMKCKWLDMFEDTDVVLFSVALTDYDEYTIDNNGVATNKILVAKHLFENIITHRIFNNKKFLLILTKFDLLEKKIERVPLTKCEWFSDFHPVISHNHKKASIGKHSNHPPLAQRAFQYIAMKFKRLFNSFTGQKLFVSMVSGLEPGSVDEALRYAREVMAWEKWDPFLRNEKSEITSTTIEASSDEKYTHSPPS*	843

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr5g0255	842	Gene3D	-	453	597	IPR011025	GO:0007165
	Apr5g0255	842	PRINTS	Alpha G protein (transducin) signature	426	441	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Apr5g0255	842	PRINTS	Alpha G protein (transducin) signature	591	613	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Apr5g0255	842	PRINTS	Alpha G protein (transducin) signature	661	689	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Apr5g0255	842	PRINTS	Alpha G protein (transducin) signature	709	718	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Apr5g0255	842	ProSiteProfiles	G-alpha domain profile.	423	822	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Apr5g0255	842	SUPERFAMILY	FYVE/PHD zinc finger	148	216	IPR011011	-
	Apr5g0255	842	Pfam	G-protein alpha subunit	417	805	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Apr5g0255	842	PANTHER	EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 2	102	832	-	-
	Apr5g0255	842	PANTHER	EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 2	15	83	-	-
	Apr5g0255	842	MobiDBLite	consensus disorder prediction	823	842	-	-
	Apr5g0255	842	PANTHER	GTP-BINDING PROTEIN ALPHA SUBUNIT	102	832	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Apr5g0255	842	PANTHER	GTP-BINDING PROTEIN ALPHA SUBUNIT	15	83	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Apr5g0255	842	Gene3D	-	598	813	IPR027417	-
	Apr5g0255	842	SMART	galpha_1	409	791	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Apr5g0255	842	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	422	809	IPR027417	-
	Apr5g0255	842	SUPERFAMILY	Transducin (alpha subunit), insertion domain	452	601	IPR011025	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr5g0255	Apr-Chr5	2274718	2279095	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr5g0255	-		-	gmx:100791124	1321.22

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr5g0255	5	2274718	2279095	Apr5g0255	5	2274718	2279095	ECH