Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0231 ATGGCCATTAGTAACACTATTCACCTCTTCAAGCTCTTCCTCTTCCTTCTAACTCTTCACTCTTCCCTCGCCGAGATTTTCTTGGAAGAGAAATTCGAAGATGGATGGAAGAGTCGTTGGGTATTGTCTGATTGGAAAAGGAGTGAAGGAAAAGCGGGTACCTTTAAGCATACTGCAGGAAAATGGTCTGGAGATCCTGATGACAAAGGTTTGCAGACATATAATGATGCCAAGCATTTTGCAATATCTGCGAAGATAGCAGAGTTTAGCAACAAGAACAGAACCCTAGTGGTCCAGTATTCTATTAGATTTGAGCAGGATATTGAATGTGGTGGCGGTTATATTAAACTCCTTTCTGGTTATGTCAATCAGAAGAAGTTTGGTGGTGAAACCCCTTATAGTTTGATGTTTGGACCAGATATATGTGGCTCGCAGACGAAGAAACTCCATCTTATACTATCTTACCAGGGGCAGAATTACCCTGTTAGAAAGGATTTGCAATGCGAAACTGACAAATTGACTCATTTCTATACATTTATTCTGAGGCCCGATGCCTCTTATAGTATCCTTGTTGATAATCGAGAAAGGGATTCTGGAAGCATGTACACTGATTGGGATATTCTTCCTCCAAGGAAAATCAAGGATGTCAATGCAAAAAAGCCGGCAGACTGGGATGATAGAGAGTACATTGAGGATCCTAATGATGTCAAACCAGAGGGATATGATAAAATTCCAGCTGAAATTCCTGACCCAAAAGCCAAGAAGCCTGTTGACTGGGATGATGAAGATGATGGACTATGGAAGGCCCCTAAGGTTCCTAATCCAGCATACAAAGGACCATGGAAACGCAAGAAAATCAAGAACCCCAACTACAAAGGAAAGTGGAAGACTCCTTGGATTGATAACCCAGAATTTGAGGATGATCCTGATCTTTATGTTCTCAAACCAATAAAGTATGTGGGAATTGAAGTGTGGCAGGTGAAGGCAGGTTCAGTTTACGACAATATCTTAATTTGTGATGACCCACAGTATGCAAAGCAAACTGTGGAAGAATTTATGGCTAACAATAGAGAGGCTGAAAAAGAAGCTTTTGAAGAAGCAGAAAAAGAAAGAAAGGCTCGAGAAGAAGAGGAAGCACAGAGAGCCAGAGAAGAGGGCGAAAAGAGGAGGAGGGAGAGGGATCATAAATATGGAGATAGGAGGCGCCGCAGAAGGCCTGATCCCCACGATTACATGGACGATTATTACCATGATGAACTTTGA 1263 0.4196 MAISNTIHLFKLFLFLLTLHSSLAEIFLEEKFEDGWKSRWVLSDWKRSEGKAGTFKHTAGKWSGDPDDKGLQTYNDAKHFAISAKIAEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSGYVNQKKFGGETPYSLMFGPDICGSQTKKLHLILSYQGQNYPVRKDLQCETDKLTHFYTFILRPDASYSILVDNRERDSGSMYTDWDILPPRKIKDVNAKKPADWDDREYIEDPNDVKPEGYDKIPAEIPDPKAKKPVDWDDEDDGLWKAPKVPNPAYKGPWKRKKIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPQYAKQTVEEFMANNREAEKEAFEEAEKERKAREEEEAQRAREEGEKRRRERDHKYGDRRRRRRPDPHDYMDDYYHDEL* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0231 420 MobiDBLite consensus disorder prediction 228 268 - -
Apr5g0231 420 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 223 IPR013320 -
Apr5g0231 420 MobiDBLite consensus disorder prediction 357 420 - -
Apr5g0231 420 PANTHER CALRETICULIN AND CALNEXIN 9 420 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Apr5g0231 420 ProSitePatterns Calreticulin family signature 2. 135 143 IPR018124 GO:0005509
Apr5g0231 420 Gene3D Calreticulin/calnexin, P domain 210 311 IPR009033 GO:0005509|GO:0005515
Apr5g0231 420 Coils Coil 349 394 - -
Apr5g0231 420 SUPERFAMILY P-domain of calnexin/calreticulin 206 321 IPR009033 GO:0005509|GO:0005515
Apr5g0231 420 ProSitePatterns Calreticulin family signature 1. 103 118 IPR018124 GO:0005509
Apr5g0231 420 MobiDBLite consensus disorder prediction 401 420 - -
Apr5g0231 420 MobiDBLite consensus disorder prediction 357 394 - -
Apr5g0231 420 PIRSF Calreticulin 4 414 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Apr5g0231 420 Gene3D - 25 381 - -
Apr5g0231 420 Pfam Calreticulin family 30 263 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Apr5g0231 420 Pfam Calreticulin family 265 338 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Apr5g0231 420 MobiDBLite consensus disorder prediction 228 271 - -
Apr5g0231 420 PRINTS Calreticulin signature 105 123 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Apr5g0231 420 PRINTS Calreticulin signature 131 147 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Apr5g0231 420 PRINTS Calreticulin signature 220 233 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Apr5g0231 420 PRINTS Calreticulin signature 248 270 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Apr5g0231 420 PRINTS Calreticulin signature 286 305 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Apr5g0231 420 PRINTS Calreticulin signature 319 339 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Apr5g0231 420 PANTHER CALRETICULIN-3 9 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0231 Apr-Chr5 2093661 2099056 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0231 8 346 Miscellaneous Gene Families AT5G61790 36.432 1.82e-68 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0231 K08057 - gmx:100802428 711.064