LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr5g0205	ATGTGCAGTGAAGAGCACAGCACTCTGACACACTTAGTTATGGCATTCAAGGGCCATTTCCTTCTTCCCATTCTTCCTTTTCTCATCGTTTTCTCATTCACAGTCACAGATTCACTTCCATTTTCGCCTCTTCTTGATGCCACTGCTTCGCTCAACCGTAGCAGTTTCCCTCATGGCTTCATCTTTGGGGCAGGATCCTCAGCCTATCAGTTCGAAGGTGCTGCAAATGAAGGTGGTAGAGGACCAAGTATATGGGATACCTTTACCCATAATCATCCAGAAAAGGTAAGGGATGGAACCACTGGAGACGTGGCCGTTGATCAATATCACCACTACAAGGAAGATGTTGGGATTATGAAGGATATGAATTTTGATTCATACAGATTCTCAATCTCTTGGCCTAGAATATTGCCAAAAGGAAAGCTAAGTGGGGGTATCAATCAAGAAGGAATCAAGTATTACAACAACCTCATCAACGAGCTATTAGCTAATGGTATACAACCATTTGTGACTCTTTTTCATTGGGACCTTCCTCAAGCTTTGGACGATGAATATGGTGGTTTCTTAAGTTCTCGTGTAGTAGATGATTTTCGAGACTATGTGGATATCTGCTTCAAGGAATTTGGAGATAGGGTGAAGCTTTGGGTTACTTTGAATGAGCCATGGTTATTCAGCCAAGGTGGCTATGCAGTGGGGAATACAGCACCGGGTCGATGTTCCGATCCACAATGCCTTGGTGGTAATTCTGGGACAGAACCTTATATCGTTGCACACAATCAACTTCTTGCTCATGCAGAAGCTGTTCATGTTTATAAGACTAAATATCAGGCACAACAGAAGGGAAAGATAGGAATAACATTAGTAAGTAACTGGTACATGCCACTCGCAGAGAACAGCACATCCGATGAAAAGGCTGCCAAACGGGCGCTTGACTTTCAGTATGGATGGTTTATGGAACCATTAACAACAGGGGACTATTCTACAAACATGCGAGCCCTGGTGGGAAGTCGATTGCCCAAGTTCTCTAAATGGCAAGCCACGCAAGTGAATGGTTCATATGATTTTATTGGCATAAACTATTACTCCTCTAATTATGTTAATGGTTTACCTCGCCAAAGCAACGCCAGACCCAGTTACATGACAGATTCTCTCACCAATACTTCATATGAACGCAATGGGAGACCCTTAGGTCTAAGGGCTGCTTCAACTTGGATGTACTTTTGGCCAAGGGGACTTCGCGACCTTTTGATATATACAAAACACAAATACAACAATCCTGTGATTTACATCACTGAAAATGGTATGAATGAATTCAATGATCCAACCCTTTCCGTGGAAGAAGCTCTTATGGATATTTACAGAATTGATTACTACTATCGCCATTTCTATTATCTTCGAGAAGCAATTAAGGCTGGCGTGAACGTGAGGGGATATTTTGCATGGTCATTTTTGGACGATTATGAATTTTTTGCTGGCTACACTGTTCGCTTTGGATTGAACTACATAGATTACAAGGATGGGTTGAAAAGGTATCCCAAGCTTTCTGCTCTATGGTACAAGAACTTTCTCAAAAGGAATTAG	1581	0.4206	MCSEEHSTLTHLVMAFKGHFLLPILPFLIVFSFTVTDSLPFSPLLDATASLNRSSFPHGFIFGAGSSAYQFEGAANEGGRGPSIWDTFTHNHPEKVRDGTTGDVAVDQYHHYKEDVGIMKDMNFDSYRFSISWPRILPKGKLSGGINQEGIKYYNNLINELLANGIQPFVTLFHWDLPQALDDEYGGFLSSRVVDDFRDYVDICFKEFGDRVKLWVTLNEPWLFSQGGYAVGNTAPGRCSDPQCLGGNSGTEPYIVAHNQLLAHAEAVHVYKTKYQAQQKGKIGITLVSNWYMPLAENSTSDEKAAKRALDFQYGWFMEPLTTGDYSTNMRALVGSRLPKFSKWQATQVNGSYDFIGINYYSSNYVNGLPRQSNARPSYMTDSLTNTSYERNGRPLGLRAASTWMYFWPRGLRDLLIYTKHKYNNPVIYITENGMNEFNDPTLSVEEALMDIYRIDYYYRHFYYLREAIKAGVNVRGYFAWSFLDDYEFFAGYTVRFGLNYIDYKDGLKRYPKLSALWYKNFLKRN*	527

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr5g0205	526	Gene3D	Glycosidases	42	525	-	-
	Apr5g0205	526	Pfam	Glycosyl hydrolase family 1	54	526	IPR001360	GO:0004553\|GO:0005975
	Apr5g0205	526	ProSitePatterns	Glycosyl hydrolases family 1 N-terminal signature.	60	74	IPR033132	-
	Apr5g0205	526	PRINTS	Glycosyl hydrolase family 1 signature	352	366	IPR001360	GO:0004553\|GO:0005975
	Apr5g0205	526	PRINTS	Glycosyl hydrolase family 1 signature	428	436	IPR001360	GO:0004553\|GO:0005975
	Apr5g0205	526	PRINTS	Glycosyl hydrolase family 1 signature	451	462	IPR001360	GO:0004553\|GO:0005975
	Apr5g0205	526	PRINTS	Glycosyl hydrolase family 1 signature	472	489	IPR001360	GO:0004553\|GO:0005975
	Apr5g0205	526	PRINTS	Glycosyl hydrolase family 1 signature	496	508	IPR001360	GO:0004553\|GO:0005975
	Apr5g0205	526	PANTHER	GLYCOSYL HYDROLASE	16	526	IPR001360	GO:0004553\|GO:0005975
	Apr5g0205	526	PANTHER	GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN	16	526	-	-
	Apr5g0205	526	SUPERFAMILY	(Trans)glycosidases	48	524	IPR017853	-
	Apr5g0205	526	ProSitePatterns	Glycosyl hydrolases family 1 active site.	428	436	IPR018120	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr5g0205	Apr-Chr5	1857460	1863678	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr5g0205	28	526	Glycoside Hydrolase	AT5G44640	53.755	0.0	564

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr5g0205	-		K01188	gmx:778162	857.44