Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0201 ATGCTTATGCAACATATTTGTGTATCAAATTCAACTCCAACATGCCTCATATTTCACAAGCCATGCCTCCGTGGCATTGCTCATCCTTCATTTCAAGCTGGGTCGAGGCCATCGTTCCCAAACCAAAGGAAACAAAAAAGGGTTACGCATAAGTGCAATGGCGATATCAAAGCCGTGGCTGTGACTGAAGCAACAGCAAAATCAGTGAAAGTAAAAGCCACAATAACTGTTCAACCAACCGTTGGTGGGTTTTTCTCAGAACTTGGATTAGAACGAGGACTTGATGATATAAAGGATTTACTTGGTCAATCACTTCTCTTGGAGCTTGTTAGCACCTCTCTTGATCCCAAGACGGGGTTAGAAAAAGAAACTATAAAAAATCATGTCCACAAAACGCATCAATCACCAAGAGAGGTAAAATATGAGGCAGAATTTGAAGTGCCAGAAAATTTTGGAGAGATTGGGGCAATTTTGGTGGAGAATGAGCATCACAGGGAAATGTTCATAAAGGACGTTGTCCTCGATGGCTTCCTGACTGGTCCCGTTAACTTCGCTTGCGAATCCTGGGTTCACTCAAAATATGATAACCCTGTGAAGAGGGTATTTTTCTCCAACAAGTCATACTTGCCATGGAAGACACCAGAAGGAGTGAAGAGGTTAAGAGAAGAGGAACTGGAACAATTACGGGGCAATGGACAAGGTGAACGCAAGAGCTTTGAGCGAATATACGATTACGATGTGTACAATGACCTTGGAGATCCTGATAGCAACATTGATCACAAGAGACCCGTTCTTGGTGGCACCCAAAATCCATACCCTAGGCGCTGCAGAACAGGGAGACCTCGCTGCGAATCTGATCCGTCGTCGGAGAAAAGAAGTAACAACGTGTACGTGCCTAGGGATGAATGCTTCTCAGAAGTAAAGCAGCTAACGTTTTCGACCAAGACCTTATACTCGGCGTTGCATGCGTTGATTCCAACGTTACAAACAGCCATCGTAGACAGAAATCTTGGATTTCCTGTATTCCGAGCCATTGATGATCTTTTTGATGAAGGACTCAGCTTGCCTCCTCTCAAAGCCAAAGGCCTTCTCAGGAATTTGTTGCCAAGGCTCATCAAGTTTATCAAAGATACCGAGGATGAGATTCTCCGTTTTGATCCTCCCGCAACAATGGATAAGGACAGGTTCTTTTGGTTAAGGGACGAAGAATTTGGAAGACAGACTCTTGCGGGTCTTAACCCATGTTGCATCGAATTGGTCACGGAATGGCCGTTGAAAAGCAAACTTGACCCCAATGTTTATGGCCCATCGGAATCTGCAATCACCACCGAAATAGTTGAACGGGAAATCAGAGGATTCTTTACAGTTGAAGAGGCCATAAAACAGAAGAAATTGTTCATACTAGACTACTACGATTTGTTGATGCCATTGGTAAAAGACGTTAGACAACTTGAAGGCACAACACTATATGGATCAAGGGCATTGTTCTTCCTAACCCACGACGGCACATTGAGGCCGCTGGCTATTGAGTTAACTCGGCCACCTATGGACGGAAAGCCACAATGGAAGGAAGTCTTCACCCCTAGCTGGCACTCAACCGGTGTTTGGCTTTGGAGGCTTGCCAAAATTCATGTCCTTGCCCACGACTCTGGCTACCACCAACTTGTTAGTCACTGGCTAAGAACTCACTGTGCAACGGAACCTTACATCATTGCAACAAACAGGCAACTGAGTGCAATGCATCCAATCTACAGGCTATTGCATCCACATTTCAGGTACACAATGGAGATCAACGCTCTTGCTCGTGAGGCACTAATAAACGCAAACGGAGTAATAGAGAGTGGCTTCACTCCAGGGAAGCTTTCAATCCTCCTAAGTTCAATTGCCTACGACAAACACTGGCAATTCAACTTGCAATCCCTTCCCGCTGATCTCATCAACAGAGGAATGGCTGTGGAAGACCCAAATGCCCCTCATGGCCTAAAACTAACCATAGAAGACTACCCTTATGCCAACGATGGCCTCATCCTTTGGGATAGCCTCAAAGGATGGTTCACTGAATATGTGAACCATTACTACCCAGATTCTAGTCACATTGAGTCAGATAAAGAACTCCAAGCTTGGTGGGAAGAGATTATAACTGTAGGACATGGTGACAAAAAAGATGAACCTTGGTGGCCTAATTTGAAAACCAAAGAAGACCTTATTGAGATAGTTACCACTATTGCATGGACAACTTCAGGGCACCATGCAGCTGTGAATTTTGGACAATTTTCTTTTGCTGGCTATTTCCCTAACAGGCCCACAATTGCAAGAAACAAGATGCCTATAGAGGACCCTTCGGACCCAGAATGGGAACTGTTTTTGCAAAAACCGGAAGTGACTATGCTCAAGTGCTTCCCCTCTCAAATTCAAGCCACTACTGTGATGACAGTGTTGGACATATTGTCGAATCATTCACCTGATGAAGAGTATCTTGGAGAAACTGTGGAGCCAGCTTGGGAGGAGGATCCGATTATTAAAGCTGCGTTTGAAAAGTTTAAGGGAAAGTTGTTAGAACTTGAAGGGGTGATTGATGAGAGGAATGCTGATAGGCGTAGGAGGAACCGAAATGGTGCTGGGGTTGTGCCTTATGAGCTTCTGAAACCAGTTTCTGAGCCTGGAGTCACGGGAAAGGGTGTTCCTTATAGCATCTCTATCTGA 2703 0.448 MLMQHICVSNSTPTCLIFHKPCLRGIAHPSFQAGSRPSFPNQRKQKRVTHKCNGDIKAVAVTEATAKSVKVKATITVQPTVGGFFSELGLERGLDDIKDLLGQSLLLELVSTSLDPKTGLEKETIKNHVHKTHQSPREVKYEAEFEVPENFGEIGAILVENEHHREMFIKDVVLDGFLTGPVNFACESWVHSKYDNPVKRVFFSNKSYLPWKTPEGVKRLREEELEQLRGNGQGERKSFERIYDYDVYNDLGDPDSNIDHKRPVLGGTQNPYPRRCRTGRPRCESDPSSEKRSNNVYVPRDECFSEVKQLTFSTKTLYSALHALIPTLQTAIVDRNLGFPVFRAIDDLFDEGLSLPPLKAKGLLRNLLPRLIKFIKDTEDEILRFDPPATMDKDRFFWLRDEEFGRQTLAGLNPCCIELVTEWPLKSKLDPNVYGPSESAITTEIVEREIRGFFTVEEAIKQKKLFILDYYDLLMPLVKDVRQLEGTTLYGSRALFFLTHDGTLRPLAIELTRPPMDGKPQWKEVFTPSWHSTGVWLWRLAKIHVLAHDSGYHQLVSHWLRTHCATEPYIIATNRQLSAMHPIYRLLHPHFRYTMEINALAREALINANGVIESGFTPGKLSILLSSIAYDKHWQFNLQSLPADLINRGMAVEDPNAPHGLKLTIEDYPYANDGLILWDSLKGWFTEYVNHYYPDSSHIESDKELQAWWEEIITVGHGDKKDEPWWPNLKTKEDLIEIVTTIAWTTSGHHAAVNFGQFSFAGYFPNRPTIARNKMPIEDPSDPEWELFLQKPEVTMLKCFPSQIQATTVMTVLDILSNHSPDEEYLGETVEPAWEEDPIIKAAFEKFKGKLLELEGVIDERNADRRRRNRNGAGVVPYELLKPVSEPGVTGKGVPYSISI* 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0201 900 PANTHER LIPOXYGENASE 48 898 IPR000907 GO:0016702|GO:0046872
Apr5g0201 900 CDD PLAT_LH2 69 205 IPR042057 -
Apr5g0201 900 ProSiteProfiles PLAT domain profile. 84 204 IPR001024 GO:0005515
Apr5g0201 900 SUPERFAMILY Lipoxigenase 209 900 IPR036226 -
Apr5g0201 900 MobiDBLite consensus disorder prediction 258 294 - -
Apr5g0201 900 Gene3D - 209 307 - -
Apr5g0201 900 Gene3D - 308 395 IPR027433 -
Apr5g0201 900 ProSitePatterns Lipoxygenases iron-binding region signature 1. 553 567 IPR020833 GO:0016702|GO:0046872
Apr5g0201 900 ProSitePatterns Lipoxygenases iron-binding region signature 2. 580 590 IPR020834 GO:0016702|GO:0046872
Apr5g0201 900 Pfam PLAT/LH2 domain 123 203 IPR001024 GO:0005515
Apr5g0201 900 PRINTS Plant lipoxygenase signature 174 192 IPR001246 GO:0016491
Apr5g0201 900 PRINTS Plant lipoxygenase signature 200 221 IPR001246 GO:0016491
Apr5g0201 900 PRINTS Plant lipoxygenase signature 239 255 IPR001246 GO:0016491
Apr5g0201 900 PRINTS Plant lipoxygenase signature 271 290 IPR001246 GO:0016491
Apr5g0201 900 PRINTS Plant lipoxygenase signature 336 357 IPR001246 GO:0016491
Apr5g0201 900 PRINTS Plant lipoxygenase signature 383 399 IPR001246 GO:0016491
Apr5g0201 900 PRINTS Plant lipoxygenase signature 422 441 IPR001246 GO:0016491
Apr5g0201 900 PRINTS Plant lipoxygenase signature 490 514 IPR001246 GO:0016491
Apr5g0201 900 PRINTS Plant lipoxygenase signature 813 827 IPR001246 GO:0016491
Apr5g0201 900 Gene3D PLAT/LH2 domain 46 208 - -
Apr5g0201 900 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 207 900 IPR013819 GO:0016702|GO:0046872
Apr5g0201 900 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 69 208 IPR036392 GO:0005515
Apr5g0201 900 PRINTS Lipoxygenase signature 535 552 IPR013819 GO:0016702|GO:0046872
Apr5g0201 900 PRINTS Lipoxygenase signature 553 570 IPR013819 GO:0016702|GO:0046872
Apr5g0201 900 PRINTS Lipoxygenase signature 573 593 IPR013819 GO:0016702|GO:0046872
Apr5g0201 900 PANTHER LIPOXYGENASE 48 898 - -
Apr5g0201 900 Pfam Lipoxygenase 217 883 IPR013819 GO:0016702|GO:0046872
Apr5g0201 900 SMART LH2_4 69 205 IPR001024 GO:0005515
Apr5g0201 900 Gene3D - 397 530 - -
Apr5g0201 900 Gene3D - 533 899 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0201 Apr-Chr5 1820804 1828714 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0201 147 900 Acyl Lipid Metabolism Gene Families AT3G45140 61.346 0.0 971
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0201 K00454 - gmx:100787202 1547.72