Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0146 ATGTCAAAGGCAGTATGCTTCATTTTCATAATTTTTGTTTTGTCACATGAAGCTGAAGGCCGTGCCCTTCGAAGCAGTGATTCTGAGTTGGTTTCTAATGGAGTTGATGATGTTCAACTCAAAAATTCACACCTGTATCTCAAAGGAAGTGAGTCTTCTGGGAAGTATTGTGAGCAAATGTATGGTTTCTTGCCATGTTCCAATAACATTTTGGGTCATCTCTTTCTAATTTTGGTTTATGAGTACTTGTTATTCCATGGAGAATCATACTTAGCTGATGGAGGTGAACAAGTCTTCAAGATTCTAGGACCTGGCATATTTGGTGCTAGAGCCTTTGATATTCTTCGTGCACTTCCTGAGCCTTTAATTATTCTTGTTTCTGGACTTTCTAGTGATACAGAGAGTGCACAAAAGTATACTTCCACTGGAGTAGGCTTGTTGGCTGGATCATCCATCTTACTTCTTACATTAGTGTGGGGAACTTGTGTTATCATTGGCAGTGAAAAGTTGAAAAATGACCCTATATTTGGTGACTCTAGTGCCTCAGATTCATCAAGTGCAACCATAAAAGAATTATTAACTGGTTTTGGTGTTACTTTGGAAGTAGACACTATGAAGAAAGCAAAAATCATGGTTTTGTCAGTTATACCACTCATCATAATGCAAATTCCCACTTTATTCCAATTTTCTTCAACACCACTTGCTGTGACCTTAATGATTGCCCTTATTCTTGATCTCATTTTTCTCATCTCAGCCTTCGTTTACCAGATTTTTACACCCCATATTGAGAAAACGAGACTAGAATATGTAAAACATGGTCAATTGATATTAAGAATTTTTCAACGTGTTGAAAAGCAAACTCTGGAAATGATCCTTACTGAGGATGGAACTCCCAATGTTGCTGCCATAAATGGGATATATAATGAAATCAGTCAACAAGGGACCAAGGATTTATTAGTTTCTGAAATAAAAGAGAGGATACTTAATAAGGATGCTACTGAAACAAATATCAAAGAGGAACAAATAGCAGAAATGTTAAGAATTTTTGACCGAAATGGTGATCAAATTATAACCAAGGAAGAATTTGTCGAAGGCTTGACAGAATTTATTAACCAAGCAAAGCATGCTTTGGACAGACACTACCTCCCCAAAAAGGCACTGAACAAAATGTATCAGGTTTTCATCAAGCCATGGATTGAACACACAAGAAAAGAACGCGAATTGAGGGGACGTGTTATATCTGAAGTATTAAGGCATGCTCAGAATGATATAGTTGGCAGGCTTTGTAAAGATGATGGGACACCTGATGAATCTGTGATCAGAAGGTTATTTGAAGAAATTGATACCAATGGGGACAACCATGTCTCAAGATCTGAGTTAGAAAAACTAGTCAAGGACATTCAATTTGTTAATGCAGAGGTGGCAATTACAAAAATGTTTCAAGAACTTGATATTAATAGAGACAATGAAATAAGTGAGAAGGAATTTGTTGATGGGTTTACAAAATGGATAAACACAAATTACTGTCACAATCATCACTCATCTCTGCCTTATGGAAACCTTCAAACCTGGGAAGAGGTTGAAAAGCTGGTGGAAGATAAGCAAAGCAAAGGAGTATATGCATGGTTGAGTGCTTTAGGATATGTGGTGCTGGGAATTACTATGCTGTCTCTTCTTGCAGAGCCCCTGATAGCCAGTGTTGAGAAATTCTCTGAAGAAGCAGGAATTTCATCATTTTTCATATCATTTATTTTAGTCCCCTTGGCTACAAATTTTAGAGAAACTACCTCAGCAATCAAAGAAGCTAGCCATAAGAAGAGAAGAAACACTTGTCAAACAATATATGAGATTTATTCAGCTGTGTTCATGAACAACATTCTTTGCTTTGTGGTGATCTCCATTCTAATATATGTTAGAGATATAAATTGGGAATTCTCAGCTGATGTACTTGTTGTAGCAATTGTATGTGCTGTAATGGGCCTCACTGCAAGTTTTCGCTCAAGTTTCCCTCTTTGGACAGCCATACCAGCATACCTCTTATACTTCCTATCATTACTTTTACTGGTTGTTCTCAAAGATGTTCTGAATTATGTTTAG 2097 0.3696 MSKAVCFIFIIFVLSHEAEGRALRSSDSELVSNGVDDVQLKNSHLYLKGSESSGKYCEQMYGFLPCSNNILGHLFLILVYEYLLFHGESYLADGGEQVFKILGPGIFGARAFDILRALPEPLIILVSGLSSDTESAQKYTSTGVGLLAGSSILLLTLVWGTCVIIGSEKLKNDPIFGDSSASDSSSATIKELLTGFGVTLEVDTMKKAKIMVLSVIPLIIMQIPTLFQFSSTPLAVTLMIALILDLIFLISAFVYQIFTPHIEKTRLEYVKHGQLILRIFQRVEKQTLEMILTEDGTPNVAAINGIYNEISQQGTKDLLVSEIKERILNKDATETNIKEEQIAEMLRIFDRNGDQIITKEEFVEGLTEFINQAKHALDRHYLPKKALNKMYQVFIKPWIEHTRKERELRGRVISEVLRHAQNDIVGRLCKDDGTPDESVIRRLFEEIDTNGDNHVSRSELEKLVKDIQFVNAEVAITKMFQELDINRDNEISEKEFVDGFTKWINTNYCHNHHSSLPYGNLQTWEEVEKLVEDKQSKGVYAWLSALGYVVLGITMLSLLAEPLIASVEKFSEEAGISSFFISFILVPLATNFRETTSAIKEASHKKRRNTCQTIYEIYSAVFMNNILCFVVISILIYVRDINWEFSADVLVVAIVCAVMGLTASFRSSFPLWTAIPAYLLYFLSLLLLVVLKDVLNYV* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0146 698 CDD EFh 440 501 IPR002048 GO:0005509
Apr5g0146 698 ProSiteProfiles EF-hand calcium-binding domain profile. 435 470 IPR002048 GO:0005509
Apr5g0146 698 ProSiteProfiles EF-hand calcium-binding domain profile. 337 372 IPR002048 GO:0005509
Apr5g0146 698 ProSiteProfiles EF-hand calcium-binding domain profile. 471 506 IPR002048 GO:0005509
Apr5g0146 698 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 390 507 - -
Apr5g0146 698 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 540 697 - -
Apr5g0146 698 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 6 382 - -
Apr5g0146 698 Pfam EF-hand domain pair 438 498 IPR002048 GO:0005509
Apr5g0146 698 Gene3D - 304 370 - -
Apr5g0146 698 ProSitePatterns EF-hand calcium-binding domain. 448 460 IPR018247 -
Apr5g0146 698 SMART efh_1 439 467 IPR002048 GO:0005509
Apr5g0146 698 SMART efh_1 341 369 IPR002048 GO:0005509
Apr5g0146 698 SMART efh_1 475 503 IPR002048 GO:0005509
Apr5g0146 698 Pfam EF-hand domain pair 334 366 IPR002048 GO:0005509
Apr5g0146 698 Pfam Sodium/calcium exchanger protein 546 689 IPR004837 GO:0016021|GO:0055085
Apr5g0146 698 SUPERFAMILY EF-hand 335 504 IPR011992 -
Apr5g0146 698 ProSitePatterns EF-hand calcium-binding domain. 350 362 IPR018247 -
Apr5g0146 698 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 540 697 - -
Apr5g0146 698 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 390 507 - -
Apr5g0146 698 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 6 382 - -
Apr5g0146 698 ProSitePatterns EF-hand calcium-binding domain. 484 496 IPR018247 -
Apr5g0146 698 Gene3D - 371 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0146 Apr-Chr5 1270071 1275164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0146 390 691 EF-hand Containing Proteins AT1G53210 39.514 1.39e-59 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0146 - - gmx:100800452 935.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0146 5 1270071 1275164 Apr5g0146 5 1270071 1275164 ECH