Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0121 ATGCTCGATGCAGAGAAAAAGATGGCGGCGGTGAAGAGAATCGGAGTGGTGGGTGGCGGCCAAATGGGATCGGGAATAGCCCAAGTCGCAGCCATGAATGGCATCGACGTTTGGCTCTACGACCTCGACCCACGCGCGCTTTCCACCGCGTCCTCTGCAATCGCTTCCTCCATCACACGCCTCGTTTCCAAATCGCACCTCGCTAAGGGCTCTGGCGATGATGCGCTGAAACGACTGCGTTTGACCTCGAATTTGGAGGAGTTGAACCTTGCCGACTTCATTATCGAAGCTATTGTAGAATCGGAGGATGTGAAGAAAAGTTTATTTGTTAAATTGGATAAGATAGCTCAAAAATCCGCAATTTTGGCGTCCAACACCAGTTCCATTTCCATCACTCGCTTAGCTTCTTCTACGACAAGGCCGCGTCAGGTGATAGGAATGCATTTTATGAACCCTCCGCCTTTGATGAAGTTGATTGAGATTGTGCGAGGCGCTGACACTTCTGAAGAGACATTTGTTGCTACGAAAGCGTTGTCGAAAAGGCTTGGCAAGACAGTTATAACCTCTCAGGATTATTCAGGCTTCATAGTAAATCGAATCCTAATGCCTATGATAAATGAAGCATTTTTTTCTCTATATACTGGTGTTGCAACCAAAGAGGATATTGATACAGGAATGAAGCTGGGTACTAACCATCCAATGGGTCCTTTAGAGCTTGCAGACTTCATTGGGTTGGATGTGTGCTTGTCAATAATGAAAGTTCTTCATACTGGCCTTGGAGACAATAAATATGCACCCTGCCCTCTGCTTGTGCAGTATGTTGATGCTGGCCGACTTGGAAGAAAACGAGGTATTGGCGTGTATGATTACCGTGAACCAAGGTCTACAGAATCATCTTCCCGTCTCTAA 909 0.4664 MLDAEKKMAAVKRIGVVGGGQMGSGIAQVAAMNGIDVWLYDLDPRALSTASSAIASSITRLVSKSHLAKGSGDDALKRLRLTSNLEELNLADFIIEAIVESEDVKKSLFVKLDKIAQKSAILASNTSSISITRLASSTTRPRQVIGMHFMNPPPLMKLIEIVRGADTSEETFVATKALSKRLGKTVITSQDYSGFIVNRILMPMINEAFFSLYTGVATKEDIDTGMKLGTNHPMGPLELADFIGLDVCLSIMKVLHTGLGDNKYAPCPLLVQYVDAGRLGRKRGIGVYDYREPRSTESSSRL* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0121 302 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 194 294 IPR008927 -
Apr5g0121 302 PIRSF HCDH 6 302 IPR022694 GO:0006631|GO:0016616|GO:0070403
Apr5g0121 302 Pfam 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 194 290 IPR006108 GO:0006631|GO:0016491|GO:0016616
Apr5g0121 302 PANTHER 3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN 9 297 - -
Apr5g0121 302 ProSitePatterns 3-hydroxyacyl-CoA dehydrogenase signature. 191 216 IPR006180 GO:0006631|GO:0016491|GO:0016616
Apr5g0121 302 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 192 IPR036291 -
Apr5g0121 302 Gene3D - 1 196 - -
Apr5g0121 302 Pfam 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 14 191 IPR006176 GO:0006631|GO:0070403
Apr5g0121 302 Gene3D - 197 301 IPR013328 GO:0016491
Apr5g0121 302 PANTHER 3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN 9 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0121 Apr-Chr5 1079217 1082116 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0121 72 292 Acyl Lipid Metabolism Gene Families AT3G15290 82.353 2.13e-139 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0121 K00074 - gmx:100170753 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0121 5 1079217 1082116 Apr5g0121 5 1079217 1082116 ECH