Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0109 ATGGACCCTGATGTGATCGAGATTCCGCCTCAAACGTCGCATAACCCTCTCAATTTGATGAAGCAGAAAGAGGCCATTTTTCATGATGTGATTGATATTGACGATGAGGATGGCTCTCCAGATTTAGCGTTAGTTGGTGAAAATGTGGGTAAAGCTTACCGTAACAAGGGGAAGATGATTGAATCCATTCATGATGGTTATGATGATCATCAATTTATGGAAGTGTTTGATGATAGATTTTGTCCTACTGTTATGGATAAATCTGGACCAGGTAGCAAGGTTGAGTCTTCCAATGGTTATACACCAGTATCAGATGATTTACTCAATGTTGATGGCCATGGTTCTGACCATTCATTTGATTATGATGATGACAATGACGATGAATATCCTGATCTTTTTATTGATGATTACATGGATGTAGATCACTATGCTTTACTACAGGCACATTTTGATAATGTGGATATACCTCCTGGAATTGAGGCACCCATTCCTTGGTTAGCAGACTATGATCTAGGTTCACAGAAGACCAATCATGATTCATTGTATCCTTGGTCTCATACTCAATCTGATGTTGAAATTTCTCATGGTACTGACTCATCCCAGCCTTCATTGTCATTACTGCATACCAACCCTGAAATCCAAGGACCTTCAGCAGGTAGTTCTAGTTTGCAAATCAAAATGGATGCTATTAAGCACCCTTCTGGAAAAGAGTTATCTTCTCCGCCGTTCTTTTCTCAAACTGCCCTGACGAGGAAGAAACCTAATGCCTCACAACACAGGAGGCATAAGTTAAAGATGGCATTAGGAGTGGAATCATCTAAATCTAATTTGTGTTTAGGACCTTCTGAAAGTAAAAAGAAACCAAATATTGTTTGTACTTCTTTAGCTAACCATGGCTTTGGAAACAATTTGGAGGCCAAGCAGCTGCCACATGGAGGCAAGGCACCAAATTGGGGACATTTTGAAAATTCAAATTCAAATAAAGCAGCGGGAAGTAGCAGTTCATATCATTCAAATTTCATTGGACCTGTTGATGGATCGTTGAATTTTGCGGGAATTGAATTTATTAACGATTGGTGGTTGAAGAATACTATTCATTTTCAGTCATTACCTAGTTATACAGCAAATTCAAGCTTTTTTGATCCCTTTGTTCCGCTTCATGCCCAATCGGAGCAAGTGCTTGATAACTCTTGGGTTCATAATTCTGCAAAGCATGGAAGTAATGGAACAACTGCAGATAGTACTGTTGTGACAATATCTGATGAAGCCAGGGATGAAATTCTGAGGAAATTTCTAAACTTCAAACAATTTGACACCATTGAAGACACTTCAGACCATTACTTTGTTCATGCTAATTCTTCCATGAATCAGCATTCAAAGAATTGGCCTAAAAGAATCCAGGAAGAGTGGAAGTTATTAGAGAAGGATTTGCCTGATTCAATATTTGTCAGAGTTTATGAATCAAGACTTGATCTTTTAAGGGCTGTGATTATTGGAGCAGAGGGAACTCCTTATCATGATGGTCTTTTCTTTTTTGATGTTTTCTTCCCCGGTGACTATCCCAATGTACCCCCGCAAGTCCACTACCACTCTGGTGGGCTTAGGCTCAACCCAAACTTATACAATTGTGGCAAAGTTTGCCTTAGTCTGCTTAACACCTGGTCTGGCCATAAGAATGAGAAGTGGCTTCCAGGTGTTTCAACAATTTTACAGGTTCTAGTCTCTATACAGGGTCTAATCTTGAATACAAAGCCTTACTTTAATGAGCCTGGATATGCACGTCTGAGTGGCTCAGCAGCTGGTGAAATGAGATCCCTGCAGTATAATGAGGAAATATTCATCCTATCATTGAGGACAATGGTGTATATAATAAGGAGGCCACCAAAGAATTTTGAGGATTTTGTTGTGGGACACTTCTGCAGCCGAGCTCATGACATTCTGGTGGCATGTAAAGCATACATGGATGGTGCTCAGGTTGGCTGTTTGGTCAAAGGTGGGGTTCAGGATGTTGATCAGGGTGACAAGAGCTGCTCCAGGCAGTTTAAGATATCTTTAGCTGCACATGTGGATATGCTTGTTGGAGTGTTTACGCACATCGGAGCTAAGGACTGTGAGAAATTCTTGTCTCCATCAGCTGCAGGGAAACAGTCATTGGGTGAATTGCCTATGGCTGCTACAATTTCTCAATGA 2190 0.405 MDPDVIEIPPQTSHNPLNLMKQKEAIFHDVIDIDDEDGSPDLALVGENVGKAYRNKGKMIESIHDGYDDHQFMEVFDDRFCPTVMDKSGPGSKVESSNGYTPVSDDLLNVDGHGSDHSFDYDDDNDDEYPDLFIDDYMDVDHYALLQAHFDNVDIPPGIEAPIPWLADYDLGSQKTNHDSLYPWSHTQSDVEISHGTDSSQPSLSLLHTNPEIQGPSAGSSSLQIKMDAIKHPSGKELSSPPFFSQTALTRKKPNASQHRRHKLKMALGVESSKSNLCLGPSESKKKPNIVCTSLANHGFGNNLEAKQLPHGGKAPNWGHFENSNSNKAAGSSSSYHSNFIGPVDGSLNFAGIEFINDWWLKNTIHFQSLPSYTANSSFFDPFVPLHAQSEQVLDNSWVHNSAKHGSNGTTADSTVVTISDEARDEILRKFLNFKQFDTIEDTSDHYFVHANSSMNQHSKNWPKRIQEEWKLLEKDLPDSIFVRVYESRLDLLRAVIIGAEGTPYHDGLFFFDVFFPGDYPNVPPQVHYHSGGLRLNPNLYNCGKVCLSLLNTWSGHKNEKWLPGVSTILQVLVSIQGLILNTKPYFNEPGYARLSGSAAGEMRSLQYNEEIFILSLRTMVYIIRRPPKNFEDFVVGHFCSRAHDILVACKAYMDGAQVGCLVKGGVQDVDQGDKSCSRQFKISLAAHVDMLVGVFTHIGAKDCEKFLSPSAAGKQSLGELPMAATISQ* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0109 729 CDD UBCc 463 604 IPR000608 -
Apr5g0109 729 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 461 621 IPR000608 -
Apr5g0109 729 SUPERFAMILY UBC-like 450 628 IPR016135 -
Apr5g0109 729 MobiDBLite consensus disorder prediction 303 329 - -
Apr5g0109 729 SMART ubc_7 464 621 - -
Apr5g0109 729 Gene3D Ubiquitin Conjugating Enzyme 421 695 IPR016135 -
Apr5g0109 729 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 19 712 - -
Apr5g0109 729 Pfam Ubiquitin-conjugating enzyme 465 585 IPR000608 -
Apr5g0109 729 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 39-RELATED 19 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0109 Apr-Chr5 956075 961665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0109 429 712 Miscellaneous Gene Families AT2G33770 49.301 2.00e-85 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0109 K10581 - ccaj:109805727 819.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0109 5 956075 961665 Apr5g0109 5 956075 961665 ECH