Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0100 ATGCCGTTAACGCCGTTTTTTTCAGCAATCGTTGAAAAGTGTGGGAACTTCACCGCGAATTTTCTGCGTCGGAGACTGTACTGTTCAACGAGCACGAATCGAAGAAACCTGTATTCTAGAATCAGTCCCCTCGGAGACCCTTCCATCAGCGTAGTTCCCGTTCTCGATAAGTGGATCGAAGAAGGTAACGCCGTTAACGGCCCTCAGCTTCAACGCATCATCAAGATCCTCCGTAGCCGCAAGCGCTTCACTCAAGCGCTTCAGGTTTCTGAGTGGATGAGTAGCAAAGAGGTGTGTCCAATTTCACCCCGTGATGAAGCAGTGCAGTTAGATCTTATTGGCAGAGTTCGTGGAGTAGATAGTGCGGAGAGGTATTTTGAGAGTGTGAGTGACGGAGACAAAACTTGGAAGCCTCATGGTGCTCTTTTGAATTGTTATGTGAGAGAAGGTTTGGTTGATAAGTCACTGTCCCAGATGCAGAAAATGAAGGAAATGGGTTTTGTTTCCTCGCTCAATTACAATAACATAATGTGCCTCTACGCACAAACCAATCAACTTGAGAAAGTCCCTGGTGTTTTGGAACTGATGAAAGAAGATGGTGTTTCTCCGGACATTGTCAGCTACAGGATTTGCATAAACTCTTATGGCGCGAGATCTGATCTCGTAAATGTGGAGAAACTGTTGGAGGAAATGGAAGGGGAACCCCACATTGGCACAGATTGGATGACATACTCTATGGTGGCTAACTTGTACATAAAAGCAGGCCTGAAGGAGAAAGCTTTGGTGTGCCTGAAGAAGTGTGAGGATAAGGCAGACAAACGCAACGCGATTGCCTACAATCATCTGATTTCACATTATGCAGGTCTTGGGAGCAAAAGGGCCATGATGAGACTTTGGAAACTCCAGAAAACAAACTGCAAGAAGCAACTCAACAGGGAATATATAACCATGCTGGGTTGTTTGGTGAAGCTAGGAGACCTTGATCAAGCTGAAAAAGTACTTGGTGAGTGGCAGTTATCTGGTAACACTTATGATTTCAGAGTGCCAAATATCCTCCTGATTGGGTATTCCCTAAGGGGATTAACTGAAAAGGCAGAAACACTGCTCCAAAGCATGGTCGAGAAAGGGAAGACTCCTACTCCTAACAGTTGGGCTATCATTGCATCTGGTTATGTGGTCAAGGAGAACATGGAGAAGGCATTTCAATGCATGAAGGAAGCTGTGGCTGTACACGCTGAGAATAAAGGTTGGAGACCAAAAGTTGATATCATTTCCAGCATATTGAGATGGGCCTCTAATAACAAAGATATTAGTGAAGTAGAAGATTTTGTCAATTCATTGAAGACTGTGATTTCATTGAATAGGGACATGTATCTGTCCTTGATCAAGATGTATGTTAGATGTGGGAAGGATGTAGATGGGATTTTAGAGAGTATGAAAGCTGATAGCATAGAGCTAGATGAAGAGATAAAGGAAGTTCTTGACTTAAGATTGCAATAA 1500 0.4367 MPLTPFFSAIVEKCGNFTANFLRRRLYCSTSTNRRNLYSRISPLGDPSISVVPVLDKWIEEGNAVNGPQLQRIIKILRSRKRFTQALQVSEWMSSKEVCPISPRDEAVQLDLIGRVRGVDSAERYFESVSDGDKTWKPHGALLNCYVREGLVDKSLSQMQKMKEMGFVSSLNYNNIMCLYAQTNQLEKVPGVLELMKEDGVSPDIVSYRICINSYGARSDLVNVEKLLEEMEGEPHIGTDWMTYSMVANLYIKAGLKEKALVCLKKCEDKADKRNAIAYNHLISHYAGLGSKRAMMRLWKLQKTNCKKQLNREYITMLGCLVKLGDLDQAEKVLGEWQLSGNTYDFRVPNILLIGYSLRGLTEKAETLLQSMVEKGKTPTPNSWAIIASGYVVKENMEKAFQCMKEAVAVHAENKGWRPKVDIISSILRWASNNKDISEVEDFVNSLKTVISLNRDMYLSLIKMYVRCGKDVDGILESMKADSIELDEEIKEVLDLRLQ* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0100 499 Gene3D Tetratricopeptide repeat domain 273 414 IPR011990 GO:0005515
Apr5g0100 499 Pfam Pentatricopeptide repeat domain 160 217 IPR002885 -
Apr5g0100 499 Gene3D Tetratricopeptide repeat domain 67 239 IPR011990 GO:0005515
Apr5g0100 499 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Apr5g0100 499 TIGRFAM PPR: pentatricopeptide repeat domain 140 168 IPR002885 -
Apr5g0100 499 TIGRFAM PPR: pentatricopeptide repeat domain 173 205 IPR002885 -
Apr5g0100 499 TIGRFAM PPR: pentatricopeptide repeat domain 350 380 IPR002885 -
Apr5g0100 499 PANTHER OS12G0527900 PROTEIN 20 497 - -
Apr5g0100 499 SUPERFAMILY TPR-like 239 414 IPR011990 GO:0005515
Apr5g0100 499 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 20 497 - -
Apr5g0100 499 Pfam PPR repeat 314 341 IPR002885 -
Apr5g0100 499 Pfam PPR repeat 350 376 IPR002885 -
Apr5g0100 499 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0100 Apr-Chr5 907639 909822 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0100 37 499 EF-hand Containing Proteins AT1G02150 32.903 5.56e-81 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0100 - - lja:Lj0g3v0287449.2 761.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0100 5 907639 909822 Apr5g0100 5 907639 909822 ECH