Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0095 ATGACCAAAGCCAAAGCAGTGGAAGAAGCACGAAACCACCATCATAGTAACCCACACTACTCTTCCGAAGACGACACAACCATCACCCAAAACGACGTCACCAACACTTCCACTCCCAACTCTCCCACCCAATTCCCCTTCCCCACCATGTGCAAATACGACGCCTGGATCTCCGAACCTTCTTCCCTCTCCGAACGCCGTTCCCGCCTTCTCCGCCAATTCGGCCTCCCTGCTCCGCCTCCCTCCGCCGCCGGCGCCGGAATATTCCGATCAAAATCAGATAACTCCGCCGATCGCGGCGCAAAGCATTGCATTCGTGGCAATGAGGGTCGTGTGGGTGTGTGTGGGGGTGGTGGAATTGGGAGTGAGGGTTTGGATGAAGAAGCTTGCACGATTAGGGATTTGGATAATGGGAAGGAGTTTGTGGTGAAGGAGGTGAGGGAGGATGGGGTGTGGAACAAGGTGAAGGAAGTGGGGACTGGGAGGCATTTGACTATGGAGGAATTTGAGATGACTGTGGGGCATTCTCCCATTGTTCAAGAGTTAATGAGTAGGCAGAATGTGGAGGAAGGTAATGGGGATGGTGTGGATTTGAATGGGAACGGTGGTGTTTGTGATGATCATGGTGATTGTGATGGTGATGGTGGCAAGGTGAAGAAGAGAGGGGGTTGGTTTAATTTCAAGAGTATAAAGAGTGTTGTTGTTGGTCATAAGGAGAGGCGGAGTGGCGACGAGAGGGATACCTCGTCCTCCGAGAAGGGTGGAGGCCGGAGGTCGAGCTCCGCCACCGATGATAGCCAGGATGGTAGTGGTAATGGTGGTGGTGGTGGTTTGTTTCATGGGCCTGAGAGAGTGAGGGTTAGGCAATATGGGAAGTCATGTAAAGAGTTTACAGGGGTTTATAAGAGCCAGGAGATACAGGCTCATGATGGATCAATTTGGAGCATCAAGTTTAGTTTGGATGGGAAGTATCTTGCTAGTGCAGGTGAGGATTGTGTGATCCATGTTTGGCAGGTTGTGGAGTCGGAGAGGAAGGGTGAGTTGCTGCTGGAGAAACCGGAAGAAGGGAATTTGAATGTCTTGTTTGTAGTGAATGGGTCGCCGGAGCCGGCTTTGTCGTCTCCTGGTGTGGACAGTAGTGTAGAGAAGAAGAGAAGGGGGAGGTTGTCCGTTAGCAGAAAATCTTTGAGCTTGGACCAATTAGTGGTGCCAGAAACTGTGTTTGCACTCACTGAAAAGCCTATATGCTCCTTTAAGGGCCATCTCGATGATGTGCTTGACCTTTCTTGGTCCAAGTCTCAGCACTTGCTCTCGTCTTCAATGGACAAAACAGTGCGGCTGTGGCATTTGTCTAGCAAGTCTTGTTTGAAAATTTTTTCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGTGGATCTTTGGATGCTAAGGTTCGCATATGGAGCATTCCTGATCGACAAGTTGTTGATTGGACTGATCTGCATGAGATGGTCACTGCTGCTTGTTATACGCCTGATGGCCAGGGTGCACTAGTTGGCTCATACAAGGGTAGTTGCCATTTATATAATACATCTGAAAATAAGTTGCAACAGAAAAGTCAGATAAATTTGCAGAATAGGAAAAAGAAATCGAGCCACAAGAAAATTACTGGCTTCCAGTTTGTGCCAGGAAGTTCATCAGAAGTACTCATCACATCTTCTGATTCTCGGATTCGACTTGTTGATGGTATTGATCTGGTTCATAAATTTAAAGGGTTTCGGAATGCAAATAGCCAAATTTCTGCCTGCCTCACAGAAAATGGTAAATATGTTGTCTCAGCAAGTGAGGATTCTCATGTATACATCTGGAAAAATGAAGCTGATTGCCGACCTAGCAGGAGCAAAGGTGTCACTGTCACAAGCTCATATGAGCATTTTCACTGTAAAGATGTGTCAGTGGCCATTCCTTGGTCTGGAATGGATGATGCATGGGAGATGCATGATACATTTTGTGGTGGTGGACTTGAGCTCGATGATGATAACCTGGATGAGGTCTCATCGGCCAATCATCCTCCTACCCCTGTAGAGGAAAATATTGGTTCTGAGGGTTCACAATTTGCTTCAGGATGCAATAATAGTCCTCTTCATGGAACCATTGCAAGTGCAACAAACAATTATTTTTTTGAAAGAATTTCGGCGACATGGCCTGAGGAAAAACTTCTAACTACAAGGGACCGGAGCCCTCGGGTCAGCATAGATTTATCTAATGGGGTGAATCAAAACATGTCAGCCTGGGGTATGGTGGTTGTAACTGCTGGCTTTCAAGGGGAAATTAAAACTTTCCAAAATTTTGGATTGCCACTTGGTATATAA 2379 0.4683 MTKAKAVEEARNHHHSNPHYSSEDDTTITQNDVTNTSTPNSPTQFPFPTMCKYDAWISEPSSLSERRSRLLRQFGLPAPPPSAAGAGIFRSKSDNSADRGAKHCIRGNEGRVGVCGGGGIGSEGLDEEACTIRDLDNGKEFVVKEVREDGVWNKVKEVGTGRHLTMEEFEMTVGHSPIVQELMSRQNVEEGNGDGVDLNGNGGVCDDHGDCDGDGGKVKKRGGWFNFKSIKSVVVGHKERRSGDERDTSSSEKGGGRRSSSATDDSQDGSGNGGGGGLFHGPERVRVRQYGKSCKEFTGVYKSQEIQAHDGSIWSIKFSLDGKYLASAGEDCVIHVWQVVESERKGELLLEKPEEGNLNVLFVVNGSPEPALSSPGVDSSVEKKRRGRLSVSRKSLSLDQLVVPETVFALTEKPICSFKGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWTDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSQINLQNRKKKSSHKKITGFQFVPGSSSEVLITSSDSRIRLVDGIDLVHKFKGFRNANSQISACLTENGKYVVSASEDSHVYIWKNEADCRPSRSKGVTVTSSYEHFHCKDVSVAIPWSGMDDAWEMHDTFCGGGLELDDDNLDEVSSANHPPTPVEENIGSEGSQFASGCNNSPLHGTIASATNNYFFERISATWPEEKLLTTRDRSPRVSIDLSNGVNQNMSAWGMVVVTAGFQGEIKTFQNFGLPLGI* 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0095 792 Gene3D - 292 650 IPR015943 GO:0005515
Apr5g0095 792 Pfam WD domain, G-beta repeat 305 337 IPR001680 GO:0005515
Apr5g0095 792 Pfam WD domain, G-beta repeat 454 491 IPR001680 GO:0005515
Apr5g0095 792 Pfam WD domain, G-beta repeat 588 626 IPR001680 GO:0005515
Apr5g0095 792 Pfam WD domain, G-beta repeat 413 448 IPR001680 GO:0005515
Apr5g0095 792 PRINTS G protein beta WD-40 repeat signature 325 339 IPR020472 -
Apr5g0095 792 PRINTS G protein beta WD-40 repeat signature 436 450 IPR020472 -
Apr5g0095 792 PRINTS G protein beta WD-40 repeat signature 478 492 IPR020472 -
Apr5g0095 792 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 306 339 - -
Apr5g0095 792 MobiDBLite consensus disorder prediction 254 270 - -
Apr5g0095 792 SMART WD40_4 411 449 IPR001680 GO:0005515
Apr5g0095 792 SMART WD40_4 452 491 IPR001680 GO:0005515
Apr5g0095 792 SMART WD40_4 299 338 IPR001680 GO:0005515
Apr5g0095 792 SMART WD40_4 585 626 IPR001680 GO:0005515
Apr5g0095 792 SMART WD40_4 545 584 IPR001680 GO:0005515
Apr5g0095 792 SMART WD40_4 494 532 IPR001680 GO:0005515
Apr5g0095 792 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 458 492 - -
Apr5g0095 792 MobiDBLite consensus disorder prediction 236 253 - -
Apr5g0095 792 ProSiteProfiles Trp-Asp (WD) repeats profile. 306 347 IPR001680 GO:0005515
Apr5g0095 792 MobiDBLite consensus disorder prediction 1 46 - -
Apr5g0095 792 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 418 452 - -
Apr5g0095 792 MobiDBLite consensus disorder prediction 236 282 - -
Apr5g0095 792 MobiDBLite consensus disorder prediction 1 21 - -
Apr5g0095 792 SUPERFAMILY WD40 repeat-like 302 627 IPR036322 GO:0005515
Apr5g0095 792 MobiDBLite consensus disorder prediction 22 46 - -
Apr5g0095 792 ProSiteProfiles Trp-Asp (WD) repeats profile. 418 458 IPR001680 GO:0005515
Apr5g0095 792 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 26 84 - -
Apr5g0095 792 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 115 791 - -
Apr5g0095 792 PANTHER WD REPEAT DOMAIN 44 115 791 IPR040324 -
Apr5g0095 792 PANTHER WD REPEAT DOMAIN 44 26 84 IPR040324 -
Apr5g0095 792 ProSiteProfiles Trp-Asp (WD) repeats profile. 458 492 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0095 Apr-Chr5 877719 884857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0095 415 626 Miscellaneous Gene Families AT5G08390 23.423 2.06e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0095 K20241 - gmx:100806518 1176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0095 5 877719 884857 Apr5g0095 5 877719 884857 ECH