Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0058 ATGACAATCACCACTTCACTGGACAGTATTGCTCCAGGTCAATCCATTCGCTACGGCGAAACATTAGTTTCAGCCGCCGGAGCTTTTGAACTGGGATTCTTCAATCCTGGAACTTCTGGAAGACTATATGTTGGAGTATGGTACAAGGATTCTCCTTCAACAGTGGTATGGGTGGCCAACAGAGAAGCACCACTCAACAATGCCTCTGGAGTTTTACAAGTCAATGATCAAGGACTTCTTGTCCTTCTTGATGCCACAAAGAGGACTGTTTGGTCCTCTAATACATCAAGCATATCGAAGAATCCAATTGCACAGCTTTTGGACACAGGAAATCTTGTAGTAAGAAATGGACATGGAAATAACATGGACAATCTTCTATGGCAGAGTTTTGATTATCCATGTGATACCTTATTGCCAGGAATGAAGCTTGGATGGAACTTGGTAACTGGTGTAGAATGGTTTTTGTCATCATGGAAAAGTGCAGAAGATCCTGGTCATGGTGACAACACAATTAAAATAGACATTCAAGGCTATCCACAATCATTTCAACTAAAAGGAAATACTATAAAGTACAGAGCAGGACATTGGAATGGCCTTACTTTTACAGGATATCCATTTGGAAGGCCTAATTCTATATTTAATTATGAATTTGTTTTCAATGACAAAGAGTTATATTATGAGGATGAACTTCTGAATAGATCCGTTTTCACTAGATATGTCATCTCCAATTTAGGTGTTGGGCAGCGTTTTGTTTGGACAAGTCAAACAAGTAGCTGGGAGGTAATGTCAGTAGCCATAGCAGATCAGTGTCAAAATTATGCTTTCTGTGGTACATATTCAATCTGCAACATCTTTAACATTCCTGTCTGTGCATGCCTGAAAGGATTTGTACCAAAACATCCAGAAGAGTGGAATGTGTCATATTGGTCTAGTGGCTGCATTAAGAGAATTCCATTGGAATGTAATAATAATGATGGTTTCCAAAAGTACACGGGTCTGAAGTTGCCAGACACGTCTTCCTCACAGTATAACAAGACCATGAACCTTACGGAATGCCAGAAATCCTGTCTACTAAACTGTTCCTGTACAGCATATGCAAGTTTGGATATACGCAACGGAGGGAGTGGATGCTTACTTTGGTTTGATGGTTTGCTTGACATTATGCAATTTGCTGAAGGGGGACAAGACCTTTACATTCGAGTTCCTGCATCAGAGCTACATAGTAAAATTTTGTTTCTTAAATTCTTCGTCCTTTTCCTTTATTGCAAGTTTCTTCGTTTTCTGCACATATATCAGTGTGAAGAGTGGATGAGTTTCTAG 1320 0.3962 MTITTSLDSIAPGQSIRYGETLVSAAGAFELGFFNPGTSGRLYVGVWYKDSPSTVVWVANREAPLNNASGVLQVNDQGLLVLLDATKRTVWSSNTSSISKNPIAQLLDTGNLVVRNGHGNNMDNLLWQSFDYPCDTLLPGMKLGWNLVTGVEWFLSSWKSAEDPGHGDNTIKIDIQGYPQSFQLKGNTIKYRAGHWNGLTFTGYPFGRPNSIFNYEFVFNDKELYYEDELLNRSVFTRYVISNLGVGQRFVWTSQTSSWEVMSVAIADQCQNYAFCGTYSICNIFNIPVCACLKGFVPKHPEEWNVSYWSSGCIKRIPLECNNNDGFQKYTGLKLPDTSSSQYNKTMNLTECQKSCLLNCSCTAYASLDIRNGGSGCLLWFDGLLDIMQFAEGGQDLYIRVPASELHSKILFLKFFVLFLYCKFLRFLHIYQCEEWMSF* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0058 439 SMART blect_4 13 133 IPR001480 -
Apr5g0058 439 PANTHER - 3 409 - -
Apr5g0058 439 CDD B_lectin 19 133 IPR001480 -
Apr5g0058 439 Pfam S-locus glycoprotein domain 191 299 IPR000858 GO:0048544
Apr5g0058 439 Gene3D - 2 130 IPR036426 -
Apr5g0058 439 Pfam D-mannose binding lectin 54 159 IPR001480 -
Apr5g0058 439 ProSiteProfiles Bulb-type lectin domain profile. 7 127 IPR001480 -
Apr5g0058 439 Gene3D Hepatocyte Growth Factor 318 398 - -
Apr5g0058 439 SUPERFAMILY alpha-D-mannose-specific plant lectins 55 164 IPR036426 -
Apr5g0058 439 Pfam PAN-like domain 321 387 IPR003609 -
Apr5g0058 439 CDD PAN_AP_plant 318 402 - -
Apr5g0058 439 PANTHER - 3 409 - -
Apr5g0058 439 ProSiteProfiles PAN/Apple domain profile. 321 402 IPR003609 -
Apr5g0058 439 PIRSF SLG 2 414 IPR035446 -
Apr5g0058 439 SMART ntp_6 322 401 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0058 Apr-Chr5 558759 560078 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0058 - - ahf:112769728 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0058 5 558759 560078 Apr5g0058 5 558759 560078 ECH