Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0038 ATGGATCTTCTGTGCAACGCATATTCGAATACCTCAGACGACGATGACGAAGAAGAAGAAGAAGGAGAAAACCCAAAACGACAGAGAGTATCACTCTCTTCCTCTAACCTACCCAAACCCTATCTTCCTTTTCCTTCGCCTATTTCCAACCCCCAAACGCAAACGCAAGCTCACATTCCTGGAACATACATTTCCAAACGCCAACGCGCATCGATGGTTCCTCTCTCTCCCTCTCTTCCTGAATCTGTCCCTGTTCCTTCTCCGTTTACTCTATCTGGGAATATCTCAGATGCTGATATACCCCATGTTATTTTACCATTGTTGAAAAGTAAAGCAAAGGGTCATCAAAGCCTGAGCCCAAAATCTGAAAAGCTATCTGCAACACTTTATGGGCATACAAAAGCTGTCAATGCTATACATTGGTCATCAATTCATGCTCATCTCCTTGCATCTGGTGGGATGGATCATATGGTTTACATATGGAATGTATGGAGCAGAAATCAGAAGAAAGCATGTGTGCTGAACTTCCACAATGCAGCAGTCAAAGATGTGAAATGGTCTCAGCAAGGGCACTTTCTGCTTTCTTGTGGATATGATTGCACTTCTAGGTTGGTTGATGTTGGGAAGGGATTGGAGACTCAAGTGTTCAGAGAAGATCAAATAGTCGGAGTTATAAAGTTTCATCCAGACAATTCAAATCTTTTCCTTTCTGGAGGATCAAAGGGCCATATCAAACTATGGGATATCAGAACTGGCAAAGTTGTGCATAACTATAATCGAAATTTAGGTCCAGTTCTAGATGTTGAGTTTACACGGAATGGGAAACAATTCATTTCTTCTAGTGACGTATCTGGAAGTAATGTCAGCGAGAATTCTATTATTGTTTGGGATGTGTCAAGACAGGTACCATTGTCTAATCAGGTTTATGTGGAAGCTTATACCTGTCCCTGTGTAAGGTGCCACCCATTTGATTCGATTTTCGTTGCTCAATCAAATGGGAATTATGTTGCAATTTTTACTACCACCCCACCTTACAGACTCAACAAATATAAGCGATATGAGAACCATGGGGTCTCCGGGTTCCCGATTAAGTGCAATTTCAGCTTGGATGGGAAAAAACTTGCCTCTGGCTCTTCTGATGGTTCTATCTACCTTTATGATTATCATTCATCTAAAGTTGTGAAGAAAATCAAGGCCTATGACCAAGCATGCATAGACGTTGCCTTCCACCCAGTTATACCTAATGTTATTGCTTCATGCTCATGGGATGGAAGTGTTTTGGTATTTGACTAG 1293 0.4153 MDLLCNAYSNTSDDDDEEEEEGENPKRQRVSLSSSNLPKPYLPFPSPISNPQTQTQAHIPGTYISKRQRASMVPLSPSLPESVPVPSPFTLSGNISDADIPHVILPLLKSKAKGHQSLSPKSEKLSATLYGHTKAVNAIHWSSIHAHLLASGGMDHMVYIWNVWSRNQKKACVLNFHNAAVKDVKWSQQGHFLLSCGYDCTSRLVDVGKGLETQVFREDQIVGVIKFHPDNSNLFLSGGSKGHIKLWDIRTGKVVHNYNRNLGPVLDVEFTRNGKQFISSSDVSGSNVSENSIIVWDVSRQVPLSNQVYVEAYTCPCVRCHPFDSIFVAQSNGNYVAIFTTTPPYRLNKYKRYENHGVSGFPIKCNFSLDGKKLASGSSDGSIYLYDYHSSKVVKKIKAYDQACIDVAFHPVIPNVIASCSWDGSVLVFD* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0038 430 ProSiteProfiles Trp-Asp (WD) repeats profile. 129 171 IPR001680 GO:0005515
Apr5g0038 430 ProSiteProfiles Trp-Asp (WD) repeats profile. 215 257 IPR001680 GO:0005515
Apr5g0038 430 Gene3D - 108 430 IPR015943 GO:0005515
Apr5g0038 430 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 129 163 - -
Apr5g0038 430 ProSitePatterns Trp-Asp (WD) repeats signature. 149 163 IPR019775 -
Apr5g0038 430 Pfam WD domain, G-beta repeat 225 248 IPR001680 GO:0005515
Apr5g0038 430 Pfam WD domain, G-beta repeat 124 162 IPR001680 GO:0005515
Apr5g0038 430 Pfam WD domain, G-beta repeat 355 387 IPR001680 GO:0005515
Apr5g0038 430 Pfam WD domain, G-beta repeat 173 204 IPR001680 GO:0005515
Apr5g0038 430 ProSiteProfiles Trp-Asp (WD) repeats profile. 367 396 IPR001680 GO:0005515
Apr5g0038 430 CDD WD40 125 430 - -
Apr5g0038 430 MobiDBLite consensus disorder prediction 1 55 - -
Apr5g0038 430 SUPERFAMILY WD40 repeat-like 116 430 IPR036322 GO:0005515
Apr5g0038 430 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1 429 - -
Apr5g0038 430 SMART WD40_4 122 162 IPR001680 GO:0005515
Apr5g0038 430 SMART WD40_4 348 387 IPR001680 GO:0005515
Apr5g0038 430 SMART WD40_4 167 206 IPR001680 GO:0005515
Apr5g0038 430 SMART WD40_4 390 430 IPR001680 GO:0005515
Apr5g0038 430 SMART WD40_4 251 297 IPR001680 GO:0005515
Apr5g0038 430 SMART WD40_4 209 248 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0038 222 430 Miscellaneous Gene Families AT5G08390 20.952 2.00e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0038 K24742 - gmx:100790592 714.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0038 5 349970 355607 Apr5g0038 5 349970 355607 ECH