Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g0003 ATGTTGCTGCAGATATCACCAAGTTTGAGGCATGTCACTGTACTTCCTGGAAAAGGGTTGAAGGAATTTATCAAAGTGAAGGTTGCATCAAGGAGGCTTTCTTATCGGATGCTCTTCTATTCACTTCTGTTCTTCACGTTTCTTCTTCGGTTTGTGTTTGTTTTGACAGCAGTGGATGGCATTGATGGAGAAAACAAGTGCTCTTCCATAGGTTGCCTGGGAATAAAACTGAAGCCAAAGATTTTGGGAAGAAGTCTTGAGTCAAATGTCCCAGAAGTGATATACGGAATATTAGATGAACCCCTAGGCAAAGATGAGCTAGAGGGAAGGTCTGATATTCCTCAGACTTTAGAAGAGTTCATGACCCAAATGAAGGAAGGTGGATATGATGCCAAGACATTTGCAATTAAACTAAGAGAAATGGTAACCTTTATGGAGCAAAGGACCAGAACAGCCAAAATCCAAGAATATTTATATCGTCATGTAGCATCAAGCAGCATACCCAAACAACTTCACTGCCTTGACTTGAGGTTGGCCAATGAGCACACCAACAATGCAGCAGCACGGCTTCAGCTACCCTCTGCAGAACTTGTCCCTGCCCTTGTTGACAACTCCTACTTCCACTTTGTCCTTGCCTCAGACAATGTGCTCGCCGCCTCAGTAGTTGCAACATCACTCATTCGCAACAGTTTGCGACCTCAGAAAGTTGTTCTGCACATAATTACAGATAGGAAGACTTATTATCCCATGCAGGCTTGGTTCTCATTGCACCCTTTATCACCTGCCATAATTGAGGTCAAGGCATTGCACCATTTTGATTGGTTTACAAAGGGAAAAGTTCCTGTGCTAGAAGCAATGGAAAAAGATCAAAATGTGCGATCACAGTTTAGAGGGGGCTCATCAGCTATAGTTGCAAATACTACTGAGAAGCCAAATGTTATTGCAGCAAAGTTGCAAGCACTTAGTCCCAAGTATAATTCTGTGATGAATCACATTCGGATACATCTTCCAGAGTTGTTCTCAAGTCTTAACAAGGTCGTCTTCCTCGATGATGACATTGTGGTACAAACTGATCTTTCACCTCTGTGGGACATTGACATGAATGGAAAAGTCAATGGAGCAGTAGAAACATGCACAGGAGAAGATAAGTTTGTGATGTCAAAGAGGTTGAAAAGCTATTTGAACTTCTCCCATCCTCTAATATACAAAAATTTTGATCCAAATGAATGTGCTTGGGCTTATGGCATGAACATTTTTGACCTGGAGGCTTGGAGGAAAACCAATATAAGCTCTAGATACCATTACTGGGTTGAGCAGAATATAAAATCCGACCTCAGTTTGTGGCAGCTAGGGACATTACCTCCTGGACTAATAGCATTCCATGGGCATGTCCACACTATTGATCCTTTCTGGCACATGCTGGGATTGGGATATCAGGAAAATTCAAGTTTTGCTGATGCTGAGAGTGCTGGTGTCATCCATTTCAATGGCAGGGCAAAGCCATGGCTAGATATAGCTTTTCCCCATCTAAGGCCATTGTGGACCAAGTATATTGACTTTTCGGATTACTTCATCAAGAGTTGTCACATTAGGGCATCATAG 1602 0.4232 MLLQISPSLRHVTVLPGKGLKEFIKVKVASRRLSYRMLFYSLLFFTFLLRFVFVLTAVDGIDGENKCSSIGCLGIKLKPKILGRSLESNVPEVIYGILDEPLGKDELEGRSDIPQTLEEFMTQMKEGGYDAKTFAIKLREMVTFMEQRTRTAKIQEYLYRHVASSSIPKQLHCLDLRLANEHTNNAAARLQLPSAELVPALVDNSYFHFVLASDNVLAASVVATSLIRNSLRPQKVVLHIITDRKTYYPMQAWFSLHPLSPAIIEVKALHHFDWFTKGKVPVLEAMEKDQNVRSQFRGGSSAIVANTTEKPNVIAAKLQALSPKYNSVMNHIRIHLPELFSSLNKVVFLDDDIVVQTDLSPLWDIDMNGKVNGAVETCTGEDKFVMSKRLKSYLNFSHPLIYKNFDPNECAWAYGMNIFDLEAWRKTNISSRYHYWVEQNIKSDLSLWQLGTLPPGLIAFHGHVHTIDPFWHMLGLGYQENSSFADAESAGVIHFNGRAKPWLDIAFPHLRPLWTKYIDFSDYFIKSCHIRAS* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g0003 533 Pfam Glycosyl transferase family 8 210 506 IPR002495 GO:0016757
Apr5g0003 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 208 530 IPR029044 -
Apr5g0003 533 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 12 531 IPR029993 GO:0047262
Apr5g0003 533 PANTHER GALACTURONOSYLTRANSFERASE 12-RELATED 12 531 - -
Apr5g0003 533 CDD GT8_like_1 207 519 - -
Apr5g0003 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 209 523 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g0003 Apr-Chr5 15264 17783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g0003 1 533 Glycosyltransferase AT5G54690 80.561 0.0 883
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g0003 K20867 - gmx:100777811 1006.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0003 5 15264 17783 Apr5g0003 5 15264 17783 ECH
Apr2g1815 2 23754447 23757795 Apr5g0003 5 15264 17783 PCT