Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr4g2388 | ATGAATCCTGAATATGATTATCTGTTCAAGCTCCTTCTTATTGGAGACTCTGGTGTTGGCAAATCCTGTCTTCTGCTGAGATTTGCTGATGATTCTTACATTGACAGCTACATAAGCACCATTGGAGTTGATTTTAAAATACGTACTGTTGAACAGGATGGAAAGACCATTAAACTCCAGATTTGGGACACGGCCGGGCAAGAACGATTTAGGACAATCACCAGCAGCTACTACCGTGGGGCACATGGGATCATTATTGTTTATGATGTGACTGATGAAGAGAGCTTCAATAATGTGAAGCAGTGGCTCAGCGAAATTGACCGCTATGCAAGTGATAATGTTAACAAACTTTTGGTTGGCAACAAGTGTGATCTGACAGCAAATAGAGCTGTGTCATATGAAACAGCTAAAGCATTTGCAGATGAAATAGGCATACCTTTTATGGAAACAAGTGCAAAAGATGCTACAAATGTCGAACAGGCTTTCATGGCAATGGCTGCTTCCATCAAGAATAGAATGGCAAGCCAACCTGCAAACAATGCAAGGCCTCCAACAGTGCAGATCAGGGGACAGCCAGTTGGTCAGAAAGGGGGGTGCTGCTCTTCCTAA | 609 | 0.4302 | MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKCDLTANRAVSYETAKAFADEIGIPFMETSAKDATNVEQAFMAMAASIKNRMASQPANNARPPTVQIRGQPVGQKGGCCSS* | 203 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr4g2388 | 202 | PRINTS | Transforming protein P21 ras signature | 9 | 30 | - | - | |
| Apr4g2388 | 202 | PRINTS | Transforming protein P21 ras signature | 32 | 48 | - | - | |
| Apr4g2388 | 202 | PRINTS | Transforming protein P21 ras signature | 50 | 72 | - | - | |
| Apr4g2388 | 202 | PRINTS | Transforming protein P21 ras signature | 112 | 125 | - | - | |
| Apr4g2388 | 202 | PRINTS | Transforming protein P21 ras signature | 147 | 169 | - | - | |
| Apr4g2388 | 202 | ProSiteProfiles | small GTPase Arf family profile. | 2 | 169 | - | - | |
| Apr4g2388 | 202 | ProSiteProfiles | small GTPase Ras family profile. | 1 | 202 | IPR001806 | GO:0003924|GO:0005525 | |
| Apr4g2388 | 202 | MobiDBLite | consensus disorder prediction | 176 | 202 | - | - | |
| Apr4g2388 | 202 | Gene3D | - | 2 | 193 | IPR027417 | - | |
| Apr4g2388 | 202 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 4 | 178 | IPR027417 | - | |
| Apr4g2388 | 202 | SMART | ran_sub_2 | 14 | 199 | - | - | |
| Apr4g2388 | 202 | Pfam | Ras family | 10 | 170 | IPR001806 | GO:0003924|GO:0005525 | |
| Apr4g2388 | 202 | PANTHER | RAS-RELATED PROTEIN RABD2A-LIKE | 6 | 201 | - | - | |
| Apr4g2388 | 202 | SMART | ras_sub_4 | 6 | 172 | - | - | |
| Apr4g2388 | 202 | SMART | rab_sub_5 | 9 | 172 | - | - | |
| Apr4g2388 | 202 | TIGRFAM | small_GTP: small GTP-binding protein domain | 7 | 163 | IPR005225 | GO:0005525 | |
| Apr4g2388 | 202 | CDD | Rab1_Ypt1 | 7 | 172 | - | - | |
| Apr4g2388 | 202 | ProSiteProfiles | small GTPase Rab1 family profile. | 4 | 202 | - | - | |
| Apr4g2388 | 202 | ProSiteProfiles | small GTPase Rho family profile. | 2 | 174 | - | - | |
| Apr4g2388 | 202 | PANTHER | LD21953P-RELATED | 6 | 201 | - | - | |
| Apr4g2388 | 202 | SMART | arf_sub_2 | 1 | 177 | - | - | |
| Apr4g2388 | 202 | SMART | rho_sub_3 | 11 | 171 | IPR001806 | GO:0003924|GO:0005525 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr4g2388 | Apr-Chr4 | 32793110 | 32797284 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr4g2388 | K07874 | - | gmx:100813403 | 399.053 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Apr4g2388 | 4 | 32793110 | 32797284 | Apr4g2388 | 4 | 32793110 | 32797284 | ECH | |
| Apr10g0488 | 10 | 11845299 | 11849213 | Apr4g2388 | 4 | 32793110 | 32797284 | PCT |