Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g2251 ATGTCTTCCCCAAGCAAGCGCCGAGAGATGGACTTGATGAAACTGATGATGAGTGATTACAAGGTGGAGATGATTAATGATGGAATGCAAGAGTTTTATGTGCATTTCCATGGACCCGATGACAGTCCTTATCATGGTGGTGTGTGGAAAGTGAGAGTTGAGTTGCCAGAAGCTTATCCTTATAAATCTCCTTCCATTGGATTTGTCAATAAGATCTATCACCCAAATGTTGATGAGATGTCTGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTTTGATCTTGTCAATGTGTTTGAGGTGTTTCTACCCCAACTTCTTCTGTATCCCAATCCATCAGACCCCTTGAATGGAGAAGCTGCAGCTTTAATGATGCGTGACCGAGCTTTTTATGAACAAAGGGTTAAAGAGTACTGTGAGAAGTATGCTAAACCTGAAGACATTGGAGATGCCACAGAAGAGAAATCCAGTGATGAGGAGATGAGTGAAGATGAATATGATTCTAGTGATGAACAGGTGGCTGGTAAAGCAGATCCTTAG 552 0.4221 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVHFHGPDDSPYHGGVWKVRVELPEAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRAFYEQRVKEYCEKYAKPEDIGDATEEKSSDEEMSEDEYDSSDEQVAGKADP* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g2251 183 Gene3D Ubiquitin Conjugating Enzyme 1 162 IPR016135 -
Apr4g2251 183 MobiDBLite consensus disorder prediction 146 183 - -
Apr4g2251 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 3 183 - -
Apr4g2251 183 MobiDBLite consensus disorder prediction 156 172 - -
Apr4g2251 183 Pfam Ubiquitin-conjugating enzyme 10 142 IPR000608 -
Apr4g2251 183 CDD UBCc 7 143 IPR000608 -
Apr4g2251 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Apr4g2251 183 SUPERFAMILY UBC-like 4 148 IPR016135 -
Apr4g2251 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 183 - -
Apr4g2251 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Apr4g2251 183 SMART ubc_7 4 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g2251 Apr-Chr4 31523719 31526963 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g2251 3 115 Miscellaneous Gene Families AT3G17000 23.967 9.12e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g2251 K10576 - gmx:100804969 350.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g2251 4 31523719 31526963 Apr4g2251 4 31523719 31526963 ECH
Apr4g2251 4 31523719 31526963 Apr10g1319 10 25518045 25520987 PCT