Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1655 ATGTTGAACTCTGAGTTGGTTATTGGTTCCATTAGAAGAAGTCCGTTGTGGGTTGCAGCTTTCTGTTTGAAGAACCTCAAGAAATCTCATGTCTTTGAGACTGACATTTCCTCTTCTGTTGAAAAGATTTTGCAAGATAAAATGGATGTTGTATCCTATAGAGTGCTGGCCTATCTTCTTCTTGGTGTTGTCAGAATTTACTCAAAAAAGGTTGAATATCTGTTCCATGATTGCAATGAGGTGCTCATTAAAATCAACAAATTTGTGACCAATACAAAAGACCATGCACATGTGGAAACCTTGCGTATGTCTGTTACTATACCAGACAGATTTGAGTTGGATGCTTTTGATCTGGATATACTTGAAGATGCTGATGGAGGCCATATTGCTCCTCAGGAAGAAATTACTCTTAAAGATGTTTTGTGTAAAACTGAGGGATTTGGGCGGCAGTTTTCTCAAGAGAAGTTTGAGGAGTTTGATGTTGATGAAAATACCTGTTCTTCTGATCACCTTATGCTGGAAGGTGATCATCTGTCTCACCTGTTGAACATGGACTTAGACGATTGTCCTCCAAATAGTCCAATTAATTTGCTGGAAAGCAGGGATATATTTCAAAGCAGCATATTCTCTCAAAAGGAACCAATGAATGTTGACACTGTTCTAACAGTAGAGGGGGTAGAAAAGGAATCTATCTGCTTGTTTGCTCAAGATCAACAAATTAATGATCAGACAGTTCAAGAAATTGTACTATGTGAGGATGAAATACATGAAGAAAGAAGTAGAATCTCTCAAGAGGAATATAGGGATATTAGTATGCTTTCTGGAACAGAAAATGAACCTGTGTTATTTGTTGAAGCATTTAATGAATCTCATCAAGTTGACAATAATATAGCAGTGAAAGAAACATCAAGCTCATTATCCCAAATGAATCAGGAAACTATTGAAGTTCAGAAAGCAAGAAGTTTTCAAGAAAGTATAGAAAGGCCTCGGGATGAAAAATCCTATGGAGAAGAATGCATGCACCAAGGTAAATCTTCTGCTGCCAAGGAGATCCTTGAAGACCTCATTGAAGGGACTGTTGAAAAGCTTAGCTTTATTCCACCGCAGTCAAAAAATCTTGACGTAACTCCTCAGTCCAAGTTTCAAGGTGGTTCAGTTGGAAGACCAAAAGCAGGTTCTACTACACCAGATTTTATGCTTATTTCTACACCAGCTGTGAGAGAGCGTGCTCGCTCTTCAACGAAAAGAAAAATTGTCCTTGATGAAATGATTGTCCTGCCTAATGAGGTACTTAGAAAGAGTATACATGATGCAAGTGACTTAGTTTCTAACCGCAGAAAATTCCGTTGCACTTTGCTTGCTCTACAGAGAGAATCTCTCATTCCTACTCTTCCTGACCGATTATATGAGTCTTTGCTTCCTTGTTACTCCTCAGAGCTTCGACACCTGTTCTCTAAAAAGAAAATGAAAATACTAAATTCCCTTGAGATTGTGGAAACTCTTGAAAAGGTAGATATGTCAGAATCCCAAACTGTTGGCAGTCCAGAGCATATAGCAACTACTCCACAAACCCCTCCTCACTGCCCAGGTTCCCTTGTAATTGAGGAAACTCCAAGGAAGTTGGATGTATCTGAATCTCAGGCTTCTGGCAGTCCAGAGCATGTAGCAACTGCTCCACAAACCCCTCCTCTGTGCCAAAAAATAAAAGTCAGGCCGACTGAGCACCCACAGAGAACTGAAATTCAAAACTCAAATAATTTAGGACCTTCTAGTCCACATGAAAGCATAGAGGGAGAGCAATCTTTTGAAAGGAATGTAGTGCTTAATCTGATGGAAGAGGAGAGAATTTCATGTGGGACAGAGGATTCAGAATTATTGGCCGGGTGGTCTGAACGAACCAGGAAAGTTGCAAGTTTCTTGGACCAGAGTTTTCTACATGCAAGTAAAAAAAGAGAGGGGCATGTTATGAACTTTTCGCAAGTTTTAGGAGGACGACTCAGGAAAGAATGTGCAAGGCTATTTTATGAAATACTGGTTTTGAGCACTACAGGTTATGTAGATGTGCAGCAAAACAAGGCTTATGGTGATATTGCAATCAGTAAACACTCAAAATTAGATCAAACTTTTCGATTTGATAGTCTGTTAAATGATGTAGGTAGATAG 2163 0.3925 MLNSELVIGSIRRSPLWVAAFCLKNLKKSHVFETDISSSVEKILQDKMDVVSYRVLAYLLLGVVRIYSKKVEYLFHDCNEVLIKINKFVTNTKDHAHVETLRMSVTIPDRFELDAFDLDILEDADGGHIAPQEEITLKDVLCKTEGFGRQFSQEKFEEFDVDENTCSSDHLMLEGDHLSHLLNMDLDDCPPNSPINLLESRDIFQSSIFSQKEPMNVDTVLTVEGVEKESICLFAQDQQINDQTVQEIVLCEDEIHEERSRISQEEYRDISMLSGTENEPVLFVEAFNESHQVDNNIAVKETSSSLSQMNQETIEVQKARSFQESIERPRDEKSYGEECMHQGKSSAAKEILEDLIEGTVEKLSFIPPQSKNLDVTPQSKFQGGSVGRPKAGSTTPDFMLISTPAVRERARSSTKRKIVLDEMIVLPNEVLRKSIHDASDLVSNRRKFRCTLLALQRESLIPTLPDRLYESLLPCYSSELRHLFSKKKMKILNSLEIVETLEKVDMSESQTVGSPEHIATTPQTPPHCPGSLVIEETPRKLDVSESQASGSPEHVATAPQTPPLCQKIKVRPTEHPQRTEIQNSNNLGPSSPHESIEGEQSFERNVVLNLMEEERISCGTEDSELLAGWSERTRKVASFLDQSFLHASKKREGHVMNFSQVLGGRLRKECARLFYEILVLSTTGYVDVQQNKAYGDIAISKHSKLDQTFRFDSLLNDVGR* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1655 720 Pfam N terminus of Rad21 / Rec8 like protein 16 95 IPR006910 GO:0005515
Apr4g1655 720 MobiDBLite consensus disorder prediction 321 337 - -
Apr4g1655 720 SUPERFAMILY "Winged helix" DNA-binding domain 632 705 IPR036390 -
Apr4g1655 720 PANTHER SISTER CHROMATID COHESION 1 PROTEIN 2 12 710 - -
Apr4g1655 720 MobiDBLite consensus disorder prediction 539 599 - -
Apr4g1655 720 MobiDBLite consensus disorder prediction 317 337 - -
Apr4g1655 720 Pfam Conserved region of Rad21 / Rec8 like protein 653 704 IPR006909 -
Apr4g1655 720 Gene3D Structural maintenance of chromosome 1. Chain E 631 709 IPR023093 -
Apr4g1655 720 MobiDBLite consensus disorder prediction 577 596 - -
Apr4g1655 720 MobiDBLite consensus disorder prediction 374 394 - -
Apr4g1655 720 PANTHER SCC1 / RAD21 FAMILY MEMBER 12 710 IPR039781 GO:0007062|GO:0008278
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1655 Apr-Chr4 19455565 19489986 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1655 K06670 - qsu:112016663 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1655 4 19455565 19489986 Apr4g1655 4 19455565 19489986 ECH