Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1649 ATGGACAAGCAAAGCCAGTATGAAAGAGTTTTCAATTACTTTGATGAAAATGGAGATGGCAAGATATCGCCGTCGGAGTTGCGGCAATGCGTGGAGGCCATCGGCGAGGAGTTATCGGCGGAGGACGCGGAGTCGGCGGTGGCGTTTCTTGACACGGACGGGGATGGGCTGGTGGGGTTTGATGATTTTGTGAAGTTTGTGGATGGAGGGAAAGAAGAAGATAAAGTGAATGACCTAAGAGAGGCTTTTAAGATGTATGAGATGGATGGGAGTGGCTGCATCACACCAAGGAGTCTTAAGAGGATGCTTAGTAGGTTAGGGGAATCTAGAAGTATTGATGATTGTCAAAATATGATTGCTCAATTTGATCTTGATGGAGATGGGGTACTCGATTTTTATGAATTTAAGGTCATGATGTTGTTGTAA 426 0.4507 MDKQSQYERVFNYFDENGDGKISPSELRQCVEAIGEELSAEDAESAVAFLDTDGDGLVGFDDFVKFVDGGKEEDKVNDLREAFKMYEMDGSGCITPRSLKRMLSRLGESRSIDDCQNMIAQFDLDGDGVLDFYEFKVMMLL* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1649 141 Gene3D - 69 141 - -
Apr4g1649 141 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 2 140 - -
Apr4g1649 141 CDD EFh 78 139 IPR002048 GO:0005509
Apr4g1649 141 CDD EFh 6 67 IPR002048 GO:0005509
Apr4g1649 141 ProSitePatterns EF-hand calcium-binding domain. 123 135 IPR018247 -
Apr4g1649 141 ProSiteProfiles EF-hand calcium-binding domain profile. 110 141 IPR002048 GO:0005509
Apr4g1649 141 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Apr4g1649 141 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Apr4g1649 141 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Apr4g1649 141 SUPERFAMILY EF-hand 3 140 IPR011992 -
Apr4g1649 141 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Apr4g1649 141 SMART efh_1 78 106 IPR002048 GO:0005509
Apr4g1649 141 SMART efh_1 114 141 IPR002048 GO:0005509
Apr4g1649 141 SMART efh_1 42 70 IPR002048 GO:0005509
Apr4g1649 141 SMART efh_1 6 34 IPR002048 GO:0005509
Apr4g1649 141 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 2 140 - -
Apr4g1649 141 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Apr4g1649 141 Gene3D - 1 68 - -
Apr4g1649 141 Pfam EF-hand domain pair 77 139 IPR002048 GO:0005509
Apr4g1649 141 Pfam EF-hand domain pair 6 67 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1649 Apr-Chr4 19307162 19307945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1649 2 139 EF-hand Containing Proteins AT1G76650 51.449 2.15e-45 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1649 K13448 - gmx:100784553 209.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1649 4 19307162 19307945 Apr4g1649 4 19307162 19307945 ECH
Apr4g1649 4 19307162 19307945 Apr6g0463 6 5428285 5428707 ECH
Apr4g1649 4 19307162 19307945 Apr6g0463 6 5428285 5428707 PCT