Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1635 ATGGCTATCTCATCCACCTTCTCAAACTTTTTCTCTTTTCTCCTCCCACCAAAGCCACAACCTATCCCTTCTCCTTCCCTCACTCGTTTCCCAACTCAGAACCACAAACTGAGTGACAACAACTCCGTGCAACTCGTTTCCCAACAGAATGATCACTCTTATTCCTCTTTGTCAGACTTGTCCTCCGTGATGAACCCCTCTCTTGCACACTCGAACACGCTCTTCTTCCGCTCAGCCTACAACGTGCAAGTGGTGGTGGACGAGAACGAGCCCGAAGAGAGGCTTCTCAACAGGTTCCGAAGAGAGGTTATGAAAGCCGGTATCATACAAGAGTGCAAGAGAAGAAGGTTCTTTGAGAACAAACAGGAAGAGAAAAAGCGCAAGACACGTGAAGCTGCCAAGCGTAAAGGCAGAAGCAGGCGCCCTCAATTGAGATCTCCAATGCTAAACAAGCAGGATGTTCAAAATACCAAGAAGGAAGAGGCTGATGATGATAACTGGGATCTACCAGAAGTAGATGCTCCATATATTTGA 534 0.4719 MAISSTFSNFFSFLLPPKPQPIPSPSLTRFPTQNHKLSDNNSVQLVSQQNDHSYSSLSDLSSVMNPSLAHSNTLFFRSAYNVQVVVDENEPEERLLNRFRREVMKAGIIQECKRRRFFENKQEEKKRKTREAAKRKGRSRRPQLRSPMLNKQDVQNTKKEEADDDNWDLPEVDAPYI* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1635 177 Gene3D Ribosomal protein S8 96 134 IPR038380 -
Apr4g1635 177 TIGRFAM S21p: ribosomal protein bS21 82 137 IPR001911 GO:0003735|GO:0005840|GO:0006412
Apr4g1635 177 PANTHER PROTEIN S21 FAMILY PROTEIN, PUTATIVE-RELATED 13 176 - -
Apr4g1635 177 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 13 176 IPR001911 GO:0003735|GO:0005840|GO:0006412
Apr4g1635 177 Pfam Ribosomal protein S21 83 136 IPR001911 GO:0003735|GO:0005840|GO:0006412
Apr4g1635 177 MobiDBLite consensus disorder prediction 120 177 - -
Apr4g1635 177 PRINTS Ribosomal protein S21 family signature 85 93 IPR001911 GO:0003735|GO:0005840|GO:0006412
Apr4g1635 177 PRINTS Ribosomal protein S21 family signature 93 102 IPR001911 GO:0003735|GO:0005840|GO:0006412
Apr4g1635 177 PRINTS Ribosomal protein S21 family signature 105 115 IPR001911 GO:0003735|GO:0005840|GO:0006412
Apr4g1635 177 PRINTS Ribosomal protein S21 family signature 117 127 IPR001911 GO:0003735|GO:0005840|GO:0006412
Apr4g1635 177 Hamap 30S ribosomal protein S21 [rpsU]. 81 137 IPR001911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1635 Apr-Chr4 18976867 18981775 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1635 - - gmx:100780245 195.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1635 4 18976867 18981775 Apr4g1635 4 18976867 18981775 ECH
Apr4g1635 4 18976867 18981775 Apr6g0469 6 5549550 5551067 PCT