Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1628 ATGTGGTCAAGCAGCAGAAGGAACGGCTTCAAATGTTGCCGCCAAAATTGCAACTCTACTCGTCTACTATTGAAACTCACTCAGCAGTCAAAATCATCGCTGCTAAGAACCTTCTCAACTCTCGCACTCGTCGCGGACAAATGCATCAGCATGAAGCAGCTGAAACAGGTGCACGCTCAGATGATCGTTTCCGCCGTTATCAACGACCACTTCGCCGTTAGTCGCTTAATCTCCTCTTGCGCCCTTTCCCCCTTCGGAGACCTCTCCCACGCTTCTAGAATCTTCCACTCCGCCCACCAACCCAACTCCTTCATGTGGAACACCCTCATTCGCGCCCAGCCCCACGCTCCCCACGCGCTCTCCCTTTACCTCAATATGCGCCGTAACGGCGTTTTCCCCGGCAAACACACCTTCCCCTTTCTCCTCAAAGCGTGTTCCCGCTTGCGTTCCCTGCCAGCTTGCAAACAGGTTCACGCGCACGTGCTGAAATTCGGCTTGAGCCGCGATTTGCACGTGGTTAATGGTTTGGTTCGAGGTTACTCTGTTTCGGGTAATGTTAACGATGCACGCTTTGCGTTTGATGAAATTTCGGACCGAAGTTTGAGTCTTTGGACCACGATGATTTGTGGGTATGCTCAGAATTTCTGTTCAAATGAGGCTTTGGCGCTTTTTGATGAGATGGTTGGTGAGGGTTTGGAACCTAATGATGTAACCTTGGCTTCGGTGTTGTCGGCGTGTGCCCGTTCTGGTTGTCTTGAGTTAGGAGAAAAAATTCATGAGTTTGTGAGAGTAAAAGAGGGTGGAGTGGGAGTGATTCTTGGGACGGCGTTGATTTATATGTATGCAAAGAATGGGGCAATTGTGACAGCTCGAAATTTGTTCGATGAAATGCCGGAGAGGAATGTTGTTACTTGGAATGCTATGATCTGTGGGTTGGCTGCTCATGGACATGTTGAAGATGCTCTTTGTCTCTTTGAGAAGATGAAGAAGGACCAGGTTGTTGTTCCCAATGATGTTACCTTCATAGGGGTTTTGTCTGCTTGTCGTCATGGTGGCTTGATTGATGTTGGTCGCAAGATTTTTAGTTCGATCGAGATGGTGTATGGAATTGAACCAAAGATTGAGCATTATGGGTGCTTGGTTGATCTTCTTGGGAGAGGAGGTAAGTTGCTAGAGGCAGTGGAACTCGTAAAGGGAATGCCATGGAAGGCTGACGTGGTTATTTTAGGAGCTTTGTTGGCGGCTTGCAAGAATAGTGGAAATACTGAGGTTGCTGAAAGAGTGGTAGAACAAATTCTTGCTCTGGAACCTCATAATCATGGAGTTCATGTTGCTTTGTCGAATATGTATGCAGAGGCGGGACAGTGGCAGGAAGTTTTGAAACTGAGAAAAATGATGAAAGAAGTGAGACTCAAAAAAGCACCAGGGTGGAGCCTTGTTGCCACTTAA 1449 0.4776 MWSSSRRNGFKCCRQNCNSTRLLLKLTQQSKSSLLRTFSTLALVADKCISMKQLKQVHAQMIVSAVINDHFAVSRLISSCALSPFGDLSHASRIFHSAHQPNSFMWNTLIRAQPHAPHALSLYLNMRRNGVFPGKHTFPFLLKACSRLRSLPACKQVHAHVLKFGLSRDLHVVNGLVRGYSVSGNVNDARFAFDEISDRSLSLWTTMICGYAQNFCSNEALALFDEMVGEGLEPNDVTLASVLSACARSGCLELGEKIHEFVRVKEGGVGVILGTALIYMYAKNGAIVTARNLFDEMPERNVVTWNAMICGLAAHGHVEDALCLFEKMKKDQVVVPNDVTFIGVLSACRHGGLIDVGRKIFSSIEMVYGIEPKIEHYGCLVDLLGRGGKLLEAVELVKGMPWKADVVILGALLAACKNSGNTEVAERVVEQILALEPHNHGVHVALSNMYAEAGQWQEVLKLRKMMKEVRLKKAPGWSLVAT* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1628 482 Pfam PPR repeat 376 401 IPR002885 -
Apr4g1628 482 Pfam E motif 421 480 IPR046848 -
Apr4g1628 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Apr4g1628 482 PANTHER OS11G0483950 PROTEIN 30 481 - -
Apr4g1628 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Apr4g1628 482 TIGRFAM PPR: pentatricopeptide repeat domain 203 235 IPR002885 -
Apr4g1628 482 TIGRFAM PPR: pentatricopeptide repeat domain 303 337 IPR002885 -
Apr4g1628 482 Pfam PPR repeat family 203 248 IPR002885 -
Apr4g1628 482 Pfam PPR repeat family 300 348 IPR002885 -
Apr4g1628 482 Gene3D Tetratricopeptide repeat domain 275 474 IPR011990 GO:0005515
Apr4g1628 482 Gene3D Tetratricopeptide repeat domain 114 271 IPR011990 GO:0005515
Apr4g1628 482 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 30 481 - -
Apr4g1628 482 SUPERFAMILY TPR-like 290 464 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1628 Apr-Chr4 18744549 18746675 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1628 40 480 Glycoside Hydrolase AT3G49170 34.590 3.72e-74 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1628 - - gmx:113000421 693.73