Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1556 ATGATGATTTCGTTTGCATTGAGAACAACATCAACTGGGCGTGCACGTGCACGTGCATCACCAAACGGGAAGCACCGACACTCCACAGTCACAGCATGGACCAAAACCGCGAACCTCAAAAGCATGTTCGGCAAATACGTGGACAGAACCAGCGTCTCTAGTTGGAACTCCGTCATCGCCGACCTCGCCCGAAGCGGCGATTCCATGGAAGCTCTCAGCGCCTTCTCGTGCATGCGCAAGCTCTCTCTGCATCCCAACCGTTCCACATTCCCTTGCGCCATCAAGTCATGCTCTGCACTCTTTGACCTTCGCTCTGGCAAACAAACCCACCAACAAGCCTTCGTCTTTGGCTTCGCTTCCGACCTATTCGTTTCCTCTGCGTTGATCGATATGTACTCTAAGTGTGGTCATTTGACAGATGCACGTGCACTGTTCGACGAAATTTCCAACCGAAATGTGGTGTCTTGGACATCCATGATTGCTGGCTATGTTCAAAATGATCGTGCCCGGGATGCAATTTACCTCTTTAAGGAGTTGCTGGTTGAGGAGAGTGGGGATTTTGGGTCTGAGGAAGAGGTTCTGGTTGATGCCGTTCTCGTGGGTTCGGTTGTTTCGGCGTGTTCTCGAGTTGGTTTGAAGAGTGTGACTGAAGGGATTCATGGTTTTGTGATCAAGAGGGGGTTTGAGGGGTGTGTGGGGGTTGGGAACACTTTGATGGATGCTTATGCTAGGTGTGGGGAGATGAGTGTGTCTAGGAAAGTGTTTGATGGGATGGATGTGAATGATGCTTATACTTGGAACTCTATGATTGGTGAATATGCGCAGAATGGATTTTCGGCAGAGGCCCTTTGTGTTTTTGATGATATGGTGAAGAATGGCGAGGTCAGATATAATGCCGTGACATTATCTGCAGTGCTGTTAGCCTGCTCAAATTTAGGGGCTCTGCAGCTAGGGAAGTGTGTACATGACCAGGTTATAAAGATGGATTTGGAGGATAATGTGTTTATAGGTACTTCTATTGTTGATATGTACTGCAAATGTGGGAGAGTTGAGATGGCAAGGAAGGCATTTGATCGCATGAAAGAGAAGAATGTTAAGTCATGGACTGCCATGATTGCTGGTTATGGCATGCATGGCCATGCAAAAGAGGCTATGGAAGTCTTCTATAAGATGATAAGGTCTGGGGTCAAGCCAAATTACATTACTTTTGTGTCAGTTTTAGCTGCTTGCAGCCATGCTGGTATGTTTAAAGAAGGCTGGCATTGGTTTAATAGAATGAAATGTGAATTTAATGTTGAACCTGGGATTGAGCATTATTCATGCATTGTTGACCTCCTTGGCCGTGCTGGCTATCTTAATGAGGCTTATGATTTGATCCAGGAAATGAAAGTGAGACCAGATTTTATAATCTGGGCTTCCCTTCTTGGGGCTTGTAGGATTCACAAGAATGTGGAACTAGGGGAGATCTCTGCAAGAAAACTATTTGAGTTAGATCCAAGTAATTGTGGGTTCTATGTGCAGCTTGCCAATATTTATGCTGATGCTGGAAGGTGGGACGATGTTGAGAGAATGAGGATATTGATGAAGAGTCATGGATTGCTTAAAACCCCAGGATTTAGTATAGTTTAA 1629 0.4573 MMISFALRTTSTGRARARASPNGKHRHSTVTAWTKTANLKSMFGKYVDRTSVSSWNSVIADLARSGDSMEALSAFSCMRKLSLHPNRSTFPCAIKSCSALFDLRSGKQTHQQAFVFGFASDLFVSSALIDMYSKCGHLTDARALFDEISNRNVVSWTSMIAGYVQNDRARDAIYLFKELLVEESGDFGSEEEVLVDAVLVGSVVSACSRVGLKSVTEGIHGFVIKRGFEGCVGVGNTLMDAYARCGEMSVSRKVFDGMDVNDAYTWNSMIGEYAQNGFSAEALCVFDDMVKNGEVRYNAVTLSAVLLACSNLGALQLGKCVHDQVIKMDLEDNVFIGTSIVDMYCKCGRVEMARKAFDRMKEKNVKSWTAMIAGYGMHGHAKEAMEVFYKMIRSGVKPNYITFVSVLAACSHAGMFKEGWHWFNRMKCEFNVEPGIEHYSCIVDLLGRAGYLNEAYDLIQEMKVRPDFIIWASLLGACRIHKNVELGEISARKLFELDPSNCGFYVQLANIYADAGRWDDVERMRILMKSHGLLKTPGFSIV* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1556 542 Pfam PPR repeat 154 180 IPR002885 -
Apr4g1556 542 Pfam PPR repeat 54 81 IPR002885 -
Apr4g1556 542 Pfam PPR repeat 236 259 IPR002885 -
Apr4g1556 542 Pfam PPR repeat 438 464 IPR002885 -
Apr4g1556 542 Pfam PPR repeat 126 152 IPR002885 -
Apr4g1556 542 Gene3D Tetratricopeptide repeat domain 52 218 IPR011990 GO:0005515
Apr4g1556 542 Gene3D Tetratricopeptide repeat domain 280 409 IPR011990 GO:0005515
Apr4g1556 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 121 155 IPR002885 -
Apr4g1556 542 TIGRFAM PPR: pentatricopeptide repeat domain 367 399 IPR002885 -
Apr4g1556 542 TIGRFAM PPR: pentatricopeptide repeat domain 264 294 IPR002885 -
Apr4g1556 542 TIGRFAM PPR: pentatricopeptide repeat domain 338 366 IPR002885 -
Apr4g1556 542 TIGRFAM PPR: pentatricopeptide repeat domain 439 464 IPR002885 -
Apr4g1556 542 TIGRFAM PPR: pentatricopeptide repeat domain 154 180 IPR002885 -
Apr4g1556 542 TIGRFAM PPR: pentatricopeptide repeat domain 401 434 IPR002885 -
Apr4g1556 542 MobiDBLite consensus disorder prediction 8 27 - -
Apr4g1556 542 Pfam PPR repeat family 363 410 IPR002885 -
Apr4g1556 542 Pfam PPR repeat family 262 309 IPR002885 -
Apr4g1556 542 Gene3D Tetratricopeptide repeat domain 410 490 IPR011990 GO:0005515
Apr4g1556 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 398 IPR002885 -
Apr4g1556 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 51 85 IPR002885 -
Apr4g1556 542 SUPERFAMILY TPR-like 344 520 IPR011990 GO:0005515
Apr4g1556 542 Pfam E motif 481 542 IPR046848 -
Apr4g1556 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 363 IPR002885 -
Apr4g1556 542 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 190 289 - -
Apr4g1556 542 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 265 542 - -
Apr4g1556 542 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 40 189 - -
Apr4g1556 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Apr4g1556 542 PANTHER BNAA09G52240D PROTEIN 265 542 - -
Apr4g1556 542 PANTHER BNAA09G52240D PROTEIN 190 289 - -
Apr4g1556 542 PANTHER BNAA09G52240D PROTEIN 40 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1556 Apr-Chr4 16987058 16991487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1556 51 540 Glycoside Hydrolase AT3G49170 34.211 2.86e-103 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1556 - - aprc:113862885 1087.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1556 4 16987058 16991487 Apr4g1556 4 16987058 16991487 ECH