Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1517 ATGGCTTCTCTTCTCCCAACACCACACATTTCCACACCGTTCAATTTCATCTCAAAGTTCAACTCTTTCCCAAGAACTTGGAACCTCTTCATCCTCACATACCCTTCACACCACAACAACAAAAACAAGCTCTTACTCTTACCCACAAATGCAGTGTACACCCCGGACCTCTATGCCCCTTTTTCGCCCTCCAAAACTGAGCTCCAAAATGACTCCATTTCTCTACTAAACGACAGAATTCGCCGTGACTATGCCAAAAGAGAAGCTTCCAGAACTATGATGGACTCAGAGGAAGCTGACAAGTACATGCAAATGGTGAAGGAGCAGCAGCAGAAAGGGTTGCAGAAGTTGAAGGGTGTTAGAGGGGGTAAAGATGGTGCCTTTAGCTATAGGGTAGACCCTTACACGCTTCGTTCTGGTGACTATGTTGTGCACAACAAAGTGGGTATTGGGAGGTTTGTTGGAATCAAGTTTGATGTTCCAAAGAATTCTGATGAATCCACTGAGTATGTTTTCATTGAGTATGCTGATGGAATGGCAAAGCTACCTGTTAAGCAGGCTTCTAAAATGCTCTATAGATATAATCTTCCAAATGAAAGCAAAAAGCCTAGGACATTGAGCAAGTTAAATGATACTAGTGCATGGGAGAGAAGAAAGATTAAGGGGAAGGTCGCAATACAGAAGATGGTTGTTGATTTGATGGAACTCTATGTACATAGGCTCAAACAAAGAAGGCCTCCTTATCCAAAGACTCCTGCCATGGCTGAATTCACAGCTGAATTTCCTTATGAACCCACGCGGGACCAGAAACAGGCATTTATTGATGTTGAGAAGGATTTGACAGAGCGAGAAACTCCAATGGACAGATTAATTTGTGGAGATGTTGGTTTTGGTAAAACTGAGGTTGCACTACGAGCTATATTCTGTGTTGTGTCAGCTAAAAAGCAAGCAATGGTTCTGGCACCAACAATAGTTCTAGCAAAACAACATTTTGATGTTATTTCAGAGCGCTTTTCTGTATATCCTGATATAAAAGTTGGACTACTAAGCAGGTTTCAGAGGTTTGGTGTCAAACAGAAGGAGAGGATTGCTTCTTTTAAAACTTCTGTGGATGTACTTACTTTGTCTGCAACCCCTATACCACGAACTCTTTATTTAGCTTTAACTGGGTTTCGTGATGCTAGTTTAATTTCAACTCCACCTCCAGAAAGAGTTCCTATCAAGACTCATCTTTCTTCATTCAGTAAGGACAGAGTAATATCAGCCATCAAGTATGAGCTGGACCGTGGTGGTCAGGTTTTTTATGTTCTGCCACGTATTAAAGGACTTGAGGATGTAACGTCATTTCTTGAAGAGTCATTTCCGGATGTGGAAATAGCCATTGCCCATGGGAAGCTATACTCAAAGCAATTAGAGGATACCATGGAGAAGTTTGCTCTAGGTGAAATAAAAATCCTTCTATGCACAAATATAGTAGAAAGTGGGCTTGATATTCAAAATGCAAACACCATCATCATTCAGGATGTTCAACAATTTGGCCTTGCACAGTTGTACCAGTTGCGTGGAAGAGTTGGGCGAGCGGATAAGGAAGCACATGCATACTTATTTTACCCTGATAAAAGCATGCTTTCTGATCATGCATTGGAGAGGCTTGCTGCTATTGAAGAATGCCGTGAACTAGGTCAAGGCTTCCAACTAGCTGAGAAAGACATGGGTATAAGAGGTTTTGGTGCAATTTTTGGTGAACAACAATCAGGAGATGTTGGAAATGTTGGTGTTGATCTTTTCTTTGAGATGCTCTTTGAGAGTTTGTCAAAGGTTGAAGATCACCGTGTTGTTTCAGTTCCTTATCACTCAGTCCAGGTTGACATAAACATCAATCCTCATCTCCCGTCTGACTACATTAATTATCTGGAGAACCCTATGGAAATTATAAATGAAGCCGAGAGAGTTGCTGAAAAAGACATCTGGAGTCTGATGCAATTTACAGAGAATTTACGCCGCCAATATGGCAAAGAGCCTCGCTCCATGGAGATTTTACTAAAAAAGCTTTACTTGAGGAGGATGGCAGCTGATTTAGGGATAACCAGAATTTACTCTTCAGGGAAGATGATCTTTATGAAAACAAACATGAGTAAGAAGGTATTCAGGATGATGATAGATTCCATGACATCAGAATTACATAGAAATTCATTGGTTCTTGAGGGGGACCAGATTAAGGCTGAACTTCTATTAGAGCTACCAAAAGAACAACTTCTTAATTGGATCTTTCAATGCTTGGCTGAACTTCATGCTTTACTACCCACCTTCATAAAATACTAG 2322 0.4091 MASLLPTPHISTPFNFISKFNSFPRTWNLFILTYPSHHNNKNKLLLLPTNAVYTPDLYAPFSPSKTELQNDSISLLNDRIRRDYAKREASRTMMDSEEADKYMQMVKEQQQKGLQKLKGVRGGKDGAFSYRVDPYTLRSGDYVVHNKVGIGRFVGIKFDVPKNSDESTEYVFIEYADGMAKLPVKQASKMLYRYNLPNESKKPRTLSKLNDTSAWERRKIKGKVAIQKMVVDLMELYVHRLKQRRPPYPKTPAMAEFTAEFPYEPTRDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAKKQAMVLAPTIVLAKQHFDVISERFSVYPDIKVGLLSRFQRFGVKQKERIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERVPIKTHLSSFSKDRVISAIKYELDRGGQVFYVLPRIKGLEDVTSFLEESFPDVEIAIAHGKLYSKQLEDTMEKFALGEIKILLCTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSMLSDHALERLAAIEECRELGQGFQLAEKDMGIRGFGAIFGEQQSGDVGNVGVDLFFEMLFESLSKVEDHRVVSVPYHSVQVDININPHLPSDYINYLENPMEIINEAERVAEKDIWSLMQFTENLRRQYGKEPRSMEILLKKLYLRRMAADLGITRIYSSGKMIFMKTNMSKKVFRMMIDSMTSELHRNSLVLEGDQIKAELLLELPKEQLLNWIFQCLAELHALLPTFIKY* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1517 773 Pfam DEAD/DEAH box helicase 287 373 IPR011545 GO:0003676|GO:0005524
Apr4g1517 773 SMART TRCF_a_2_a 623 721 IPR005118 GO:0006281
Apr4g1517 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 400 604 IPR027417 -
Apr4g1517 773 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 415 572 IPR001650 -
Apr4g1517 773 Gene3D - 400 606 IPR027417 -
Apr4g1517 773 Pfam CarD-like/TRCF domain 137 237 IPR003711 -
Apr4g1517 773 Pfam Helicase conserved C-terminal domain 422 527 IPR001650 -
Apr4g1517 773 Gene3D - 140 200 - -
Apr4g1517 773 SMART helicmild6 444 528 IPR001650 -
Apr4g1517 773 Gene3D - 354 399 IPR027417 -
Apr4g1517 773 Gene3D - 201 353 IPR027417 -
Apr4g1517 773 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 25 353 - -
Apr4g1517 773 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 353 744 - -
Apr4g1517 773 SUPERFAMILY CarD-like 131 200 IPR036101 -
Apr4g1517 773 SUPERFAMILY TRCF domain-like 616 763 IPR037235 -
Apr4g1517 773 SMART CarD_TRCF_2 136 238 IPR003711 -
Apr4g1517 773 PANTHER TRANSCRIPTION-REPAIR-COUPLING FACTOR 25 353 - -
Apr4g1517 773 PANTHER TRANSCRIPTION-REPAIR-COUPLING FACTOR 353 744 - -
Apr4g1517 773 Pfam TRCF domain 625 713 IPR005118 GO:0006281
Apr4g1517 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 402 IPR027417 -
Apr4g1517 773 SMART ultradead3 261 408 IPR014001 -
Apr4g1517 773 Gene3D - 619 766 IPR037235 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1517 Apr-Chr4 16155124 16188853 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1517 - - gmx:100805206 1306.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1517 4 16155124 16188853 Apr4g1517 4 16155124 16188853 ECH