LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr4g1507	ATGGCTTCGCCTACTCTTTCTGTAGCCAAACCAGCTCTTCAGGCTAATGGGAAAGGCTTCTCTGAGTTCTCTGGCCTTCGTAGCACTTCAGTGTACCTTCCCTTTTCAAGAAAAACTTCAGAAGATCTCCATTCTGTCATTGCCTTCCAGACTTCAGCAGTTGGAAGCAGTGGAGGGTACAGGAAAGGTGTAGCAGAAGCAAAGCTGAAAGTTGCCATAAACGGGTTTGGAAGGATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTCGTAAGGACTCTCCTCTTGATGTCATTGCTATCAATGACACTGGAGGTGTAAAACAAGCCTCTCACCTTCTAAAGTACGATTCTACACTTGGAATCTTCGAAGCTGATGTCAAGCCTGTGGGTACTGATGGCATTTCTGTTGATGGAAAAGTCATCAAAGTTGTCTCTGACCGCAACCCTGCCAACCTTCCTTGGAAACAAGATAGGGATATGTATGAAGGTGTGTGTGTGGTGTTGCATAATTGCAGAGACATGGGGGTGGACTTGGTGATTGAAGGAACAGGGGTGTTCGTGGACAGAGAGGGTGCAGGGAAGCACATTCAAGCAGGAGCTAAGAAAGTGCTCATCACAGCCCCTGGCAAAGGAGACATTCCCACCTATGTTGTTGGTGTCAATGCTGATGCTTACAGTCCAGATGAACCCATCATCAGCAATGCTTCTTGCACCACTAACTGCCTTGCCCCCTTTGTCAAAGTCCTTGATCAGAAATTCGGTATCATCAAGGGTACCATGACCACCACTCACTCCTACACGGGTGACCAAAGGCTTCTTGATGCGAGCCACCGTGACTTAAGGCGTGCAAGAGCAGCAGCTCTTAACATAGTTCCAACTTCAACAGGAGCAGCAAAGGCAGTGGCACTTGTTCTCCCAACCCTCAAAGGGAAACTCAATGGCATTGCACTTCGTGTGCCAACACCAAATGTTTCTGTGGTGGACCTTGTTGTTCAAGTCTCAAAGAAGACCTTTGCTGAAGAAGTTAATGCAGCTTTCAGAGAGAGTGCAGAGAAAGAACTGAATGGAATTCTCTCTGTTTGTGATGAACCCCTTGTGTCCGTTGACTTTAGGTGCACTGATGTGTCTTCAACCGTTGACTCATCGTTGACCATGGTCATGGGTGATGACATGGTGAAGGTGATTGCTTGGTATGACAACGAATGGGGCTACTCTCAAAGGGTTGTGGATTTGGCTGACATTGTTGCCAACAATTGGAAGTGA	1263	0.4735	MASPTLSVAKPALQANGKGFSEFSGLRSTSVYLPFSRKTSEDLHSVIAFQTSAVGSSGGYRKGVAEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIKVVSDRNPANLPWKQDRDMYEGVCVVLHNCRDMGVDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYSPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPTLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAEKELNGILSVCDEPLVSVDFRCTDVSSTVDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK*	421

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr4g1507	420	Gene3D	Dihydrodipicolinate Reductase; domain 2	236	400	-	-
	Apr4g1507	420	PANTHER	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2	1	420	IPR020831	GO:0016620
	Apr4g1507	420	ProSitePatterns	Glyceraldehyde 3-phosphate dehydrogenase active site.	235	242	IPR020830	GO:0016620
	Apr4g1507	420	SUPERFAMILY	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	237	399	-	-
	Apr4g1507	420	Pfam	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain	70	156	IPR020828	GO:0051287
	Apr4g1507	420	Pfam	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain	242	398	IPR020829	GO:0016620
	Apr4g1507	420	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	68	253	IPR036291	-
	Apr4g1507	420	Gene3D	-	70	412	-	-
	Apr4g1507	420	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	195	208	IPR020831	GO:0016620
	Apr4g1507	420	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	231	249	IPR020831	GO:0016620
	Apr4g1507	420	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	258	274	IPR020831	GO:0016620
	Apr4g1507	420	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	314	331	IPR020831	GO:0016620
	Apr4g1507	420	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	354	369	IPR020831	GO:0016620
	Apr4g1507	420	TIGRFAM	GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I	70	410	IPR006424	GO:0006006\|GO:0016620\|GO:0050661\|GO:0051287
	Apr4g1507	420	SMART	gp_dh_n_7	69	237	IPR020828	GO:0051287
	Apr4g1507	420	PANTHER	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE	1	420	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr4g1507	Apr-Chr4	16022088	16025071	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr4g1507	K05298		-	rcu:8273055	699.508

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr4g1507	4	16022088	16025071	Apr4g1507	4	16022088	16025071	ECH