Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1506 ATGGGCGCGAGCAGCGACCCCACCCAAGACGGTTCAGACGAGCAACAGAAGCGTTCAGAGATCTACACATACGAGGCACCATGGCACATCTATGCCATGAACTGGAGCGTCCGTCGCGACAAAAAGTACCGTCTCGCCATCGCTTCTCTCCTCGAACAGTACCCTAACCGAGTCGAAATCGTCCAACTCGACGATTCCAATGGCGAGATCCGCTGCGACCCAAACCTCTCTTTCGAACACCCTTACCCTCCCACAAAAGCCATCTTCATCCCCGACAAAGACTGCCTCCGCCCGGACCTCCTCGCCACCTCCTCCGACTTCCTCCGTGTCTGGCGCATCTCCGATCCCGACGAATCGAAACCTCAACGCGTGGAACTCAAATCCCTCCTCAACGGGAACAAAAACAGCGAGTACTGTGGCCCCCTCACCTCCTTCGACTGGAACGAGGCCGAACCCAAACGCATCGGCACCTCCAGCATCGACACCACCTGCACCATCTGGGACATCGAGAAGGAAACCGTTGATACCCAGCTAATTGCTCACGATAAAGAGGTCTACGACATCGCTTGGGGCGGCGTTGGCGTTTTCGCTTCCGTTTCCGCTGATGGCTCCGTTAGGGTTTTTGATCTCCGTGATAAGGAGCATTCCACTATTATTTACGAGAGCTCTGAGCCGGATACGCCGTTGGTTCGGCTCGGCTGGAATAAACAGGACCCACGCTATATGGCTACGATTATTATGGATAGTGCTAAGGTGGTAGTGTTGGATATTCGCTTCCCCACGCTTCCTGTGGTGGAGCTGCAGAGGCATCAGGCGAGTGTGAACGCTATTGCTTGGGCGCCGCATAGCTCTTGCCATATATGCACCGCAGGGGATGATTCCCAGGCTCTTATTTGGGACCTCTCTTCCATGGGTCAACCCGTTGAGGGTGGACTTGACCCGATTCTTGCTTACACTGCTGGGGCAGAGATTGAGCAGCTTCAGTGGTCGTCTTCGCAGCCTGATTGGGTTGCCATTGCGTTCTCCACAAAGCTTCAGATTCTCAGGGTTTGA 1053 0.5489 MGASSDPTQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDSNGEIRCDPNLSFEHPYPPTKAIFIPDKDCLRPDLLATSSDFLRVWRISDPDESKPQRVELKSLLNGNKNSEYCGPLTSFDWNEAEPKRIGTSSIDTTCTIWDIEKETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1506 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 267 303 IPR001680 GO:0005515
Apr4g1506 350 Pfam WD domain, G-beta repeat 267 300 IPR001680 GO:0005515
Apr4g1506 350 Pfam WD domain, G-beta repeat 178 209 IPR001680 GO:0005515
Apr4g1506 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 267 303 - -
Apr4g1506 350 SMART WD40_4 123 168 IPR001680 GO:0005515
Apr4g1506 350 SMART WD40_4 260 300 IPR001680 GO:0005515
Apr4g1506 350 SMART WD40_4 171 209 IPR001680 GO:0005515
Apr4g1506 350 ProSitePatterns Trp-Asp (WD) repeats signature. 287 301 IPR019775 -
Apr4g1506 350 Gene3D - 10 349 IPR015943 GO:0005515
Apr4g1506 350 SUPERFAMILY WD40 repeat-like 27 305 IPR036322 GO:0005515
Apr4g1506 350 PANTHER WD REPEAT CONTAINING PROTEIN 13 350 IPR045159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1506 Apr-Chr4 16000318 16002769 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1506 K11805 - cpap:110813059 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1506 4 16000318 16002769 Apr4g1506 4 16000318 16002769 ECH