Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr4g1505 | ATGAAGGTGGCATGTTGCACCCCAGACATCAATGTCCCCTATGTGGGAACCCCAGGAACAAGGTTTTGTTCTCAGGAAGCTCTTGTCTTTCTTCAAAGATGCAGCAATTTCAAGCAGCTGAAGCAAGTCCATGGTAGAATAATCCGTTTTGGTCTCACCTATGACCAATTGCTTATTAGGAAGCTTCTTCAGCTTTCTTCTTCTTATGGTAAAACGAACTATGCCACTCTGGTATTTGATCAACTCAATGCCCCGGATTCCTTCACTTGGAATGTCATGATTAGAGCTTATACTATTAGTGGTTCCCCTGAAAAGGCACTTCTTTTGTTCAAGGCTATGCTATGCCATGGCTTTGCACCTGACAAATTTACATATCCTTTTGTGATAAATGCTTGCAATGCCTCTTCTGCCCTTGATTTTGGAAGAGTAACCCATGCTTTAGCATTCAAAATGGGATTTTGGGGTGATCTTTATGTGCAGAACACCATGATGAATCTCTACTTCAAGTGTGAGGATGTAGATGGTGGACGGAAGGTGTTTGATAAAATGCGTGTTCGAAATGTGTTCTCGTGGACCACCGTGATTGCTGGTCTTGCTGCTTATGGACAATTGGACGCTGCCCGCAAATTGTTTGAGCAAATGCCTTCTAAAAATGTTGTTTCCTGGACAGCAATGATTGATGGGTATGTGAAACACAAGCAACCCACTGAAGCTTTTAATTTGTTTGAAAGAATGCATGCCGATAATGTGAAGCCAAATGAATACACTGTGGTGAGCTTGGTTAAAGCTTGTACTGAAATGGGTAGCCTCAAGTTGGGTAGATGGATTCATGATTTTGTTCTCAAGAATGGGTTTGAGGTTGATCCTTTCTTGGGTACCGCACTTATTGACATGTACAGCAAGTGTGGAAATCTAGATCATGCAAGGACAGTGTTTGGTATGATGCAGGTGAGAAACTTGGCTACCTGGAATACGATGATCACTAGCTTGGGTGTGCACGGGTTTAGGAATGAAGCCATTTCCCTTTTCGAAGAAATGGAGAAGGCAAATGTAGTACCGGATGCTATCACATTTGTAGGTGTTCTGAGTGCCTGTGTTCATATGAATGACCTAGAACAAGGTCAGAAGTATTTCAATATTATGACAGATTGTTATGGTATAACACCTATCTTGGAGCACTATACATGCATGGTTGAACTCTATACTCGCGCTAATAAGGTGGATGAAATTCACACGTTCGGGAACACGAGGGCATTGTCAATGGAAGCAAATCATAATGTTGCAGAATTGCTTCAAGAGAGCAAACTCACTAGTATAGATGACATAAAGAACTTCATACAAAAGCATTGTGGGGATTTCGTTTTATCAGAACTAGTTTTAGACCATTCTTCCACAAGCACTCCACTTCAACTCCAGATCTCAAGTGAGATGTAG | 1434 | 0.4163 | MKVACCTPDINVPYVGTPGTRFCSQEALVFLQRCSNFKQLKQVHGRIIRFGLTYDQLLIRKLLQLSSSYGKTNYATLVFDQLNAPDSFTWNVMIRAYTISGSPEKALLLFKAMLCHGFAPDKFTYPFVINACNASSALDFGRVTHALAFKMGFWGDLYVQNTMMNLYFKCEDVDGGRKVFDKMRVRNVFSWTTVIAGLAAYGQLDAARKLFEQMPSKNVVSWTAMIDGYVKHKQPTEAFNLFERMHADNVKPNEYTVVSLVKACTEMGSLKLGRWIHDFVLKNGFEVDPFLGTALIDMYSKCGNLDHARTVFGMMQVRNLATWNTMITSLGVHGFRNEAISLFEEMEKANVVPDAITFVGVLSACVHMNDLEQGQKYFNIMTDCYGITPILEHYTCMVELYTRANKVDEIHTFGNTRALSMEANHNVAELLQESKLTSIDDIKNFIQKHCGDFVLSELVLDHSSTSTPLQLQISSEM* | 478 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr4g1505 | 477 | Gene3D | Tetratricopeptide repeat domain | 269 | 438 | IPR011990 | GO:0005515 | |
| Apr4g1505 | 477 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 218 | 252 | IPR002885 | - | |
| Apr4g1505 | 477 | Pfam | PPR repeat | 161 | 188 | IPR002885 | - | |
| Apr4g1505 | 477 | TIGRFAM | PPR: pentatricopeptide repeat domain | 189 | 220 | IPR002885 | - | |
| Apr4g1505 | 477 | TIGRFAM | PPR: pentatricopeptide repeat domain | 322 | 355 | IPR002885 | - | |
| Apr4g1505 | 477 | TIGRFAM | PPR: pentatricopeptide repeat domain | 293 | 319 | IPR002885 | - | |
| Apr4g1505 | 477 | TIGRFAM | PPR: pentatricopeptide repeat domain | 88 | 121 | IPR002885 | - | |
| Apr4g1505 | 477 | TIGRFAM | PPR: pentatricopeptide repeat domain | 220 | 254 | IPR002885 | - | |
| Apr4g1505 | 477 | TIGRFAM | PPR: pentatricopeptide repeat domain | 159 | 188 | IPR002885 | - | |
| Apr4g1505 | 477 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 187 | 217 | IPR002885 | - | |
| Apr4g1505 | 477 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 86 | 120 | IPR002885 | - | |
| Apr4g1505 | 477 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 20 | 432 | - | - | |
| Apr4g1505 | 477 | PANTHER | BNAA06G32750D PROTEIN | 20 | 432 | - | - | |
| Apr4g1505 | 477 | Pfam | PPR repeat family | 85 | 132 | IPR002885 | - | |
| Apr4g1505 | 477 | Pfam | PPR repeat family | 319 | 366 | IPR002885 | - | |
| Apr4g1505 | 477 | Pfam | PPR repeat family | 217 | 264 | IPR002885 | - | |
| Apr4g1505 | 477 | Gene3D | Tetratricopeptide repeat domain | 20 | 142 | IPR011990 | GO:0005515 | |
| Apr4g1505 | 477 | Gene3D | Tetratricopeptide repeat domain | 143 | 268 | IPR011990 | GO:0005515 | |
| Apr4g1505 | 477 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 319 | 353 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr4g1505 | Apr-Chr4 | 15997390 | 16000188 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Apr4g1505 | 34 | 416 | Glycoside Hydrolase | AT3G49170 | 28.792 | 8.47e-51 | 183 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr4g1505 | - | - | gmx:100789790 | 777.319 |