Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1494 ATGGTCAGAATCATACCAAACCTACCGCTTTTCTCTGTTGTGTTGCAACGCTTCAGCTATAATTCATTTGCTGTTAATCACTGTCATCATATAGTTGAACTGCCACTTAAGAGTAGTGTATTCAATTTCCTTAACCCTTTGAACGCTGAAACATTTTTAGCTCCTTCAAGATTTGGTTTCTCCTTCAGCCCCTTTTCTGCTTCTTCAATCAGAAGCCTAGGGATTTCAACTGATGCCCCTGCACATGGATTGGATGAGGCCATGAGTGATGATGATACGGATGAGGATGATGGTACCCATTGTAGTCAGTTACATTTAAAGGATTATGGTCTTGCCCAAGATGTTAAAACCATTTTGGATATAATGCATGAGTCAGGTTATGGAGCATCTAAAATCAAGCAAAAGCTTGAGCATTGCAGTGTTATGCCATCATCAGAACTTGTAGTGGAGATCCTTTCAAGGACTCGCAATGATTGGGATGTTGCTTTCACCTTTTTCTTGTGGGCTGGCAAGCAACTGGGATATGCTCATTCGGCTCGCGAGTACAATTCCATGATCTCTATCCTTGGCAAAATGAGGAAGTTTGATACTGCTTGGACCTTGATTGAGGAAATGAGAGGAGGTAGAATGGGTCCATCTCTTGTCACTTCACAAACTCTGTTGATTATGATCAGGAGATACTGTGCTGTACATGATGTTGCAAGGGCTATCAATACTTTCTATGCTTATAAACGATTTGACTTTCAAGTTAGGCTGGAAGAATTTCAAAGTCTCCTTTCTGCCCTATGCCGGTACAAGAATGTGGAAGATGCCGAGCACTTACTGTTCTGCAACAAAAATGTGTTCCCATTTGACACCAAAAGCTTTAACATCATTCTGAATGGATGGTGTAATATGATTGTTAGCACTCGTCATGCAGAAAGAATTTGGCAGGAGATGAGCAAGAGAGGAATCCAACATGACGTTGTCTCATATGCAAGTATCATATCTTGCTATTCAAAATCTTCTAAACTTTATATGGTGCTCAGGCTGTTTGATGAGATGAAGAAAAGGAGGATCACTCCAGATAGGAAGGTTTATAATGCGGTCATTTATGCTCTAGCAAAGGTTGGGCTTGTGATAGAAGCTGTCAATCTCGTTGGAACAATGGAAGACAACAATGTCACTCCAGATGTTGTTACTTACAACTCCCTGATCAAACCTCTCTGCAAAGCTCGCAAAATTGATGAAGCTAAAGAAATTTTTGATCAGATGTTGAAGCGCTCCCTATCCCCAACAATTCAGACTTTCCATGCTTTCTTCCGTATATTGAGGACCAAGGAAGAAGTATTTGAGCTTTTAGACAAAATGAGAGAGCTGAGATGTTACCCTATCACTGAGACTTATATAATGTTGATAAGAAAATTTTGCCGCTGGCGTCAGCTTGATGATGTATTTAAGTTATGGGATGTGATGAGGGAAGATGGAATCAGCCATGATCGTAGTTCTTACATTGTGCTGATTCATGGGCTGTTTCTGAATGGAAAACTGGAGGAAGCTTACAACTATTATACAGATATGCAAGAGAAAGGCTTCCTCCCCGAGCCAAAGACAGAAAAAATGCTTCAGGCATGGGTTTCTGGGAGACAGGTAACAGAGACTCAGGCAACAGATTTAGAACACAATCAATTGGAACAAGACACTCTTAGAAAGAAAGTCAAGGCCGTACCCAGCAAATTTGATAGGGAAAAAGCTTTTCTTCGCCAACCTGAGACCAGAAGAGTAACAAGAGAACGGGGCTTTTCTTTCTGGGAGCAGTAA 1800 0.41 MVRIIPNLPLFSVVLQRFSYNSFAVNHCHHIVELPLKSSVFNFLNPLNAETFLAPSRFGFSFSPFSASSIRSLGISTDAPAHGLDEAMSDDDTDEDDGTHCSQLHLKDYGLAQDVKTILDIMHESGYGASKIKQKLEHCSVMPSSELVVEILSRTRNDWDVAFTFFLWAGKQLGYAHSAREYNSMISILGKMRKFDTAWTLIEEMRGGRMGPSLVTSQTLLIMIRRYCAVHDVARAINTFYAYKRFDFQVRLEEFQSLLSALCRYKNVEDAEHLLFCNKNVFPFDTKSFNIILNGWCNMIVSTRHAERIWQEMSKRGIQHDVVSYASIISCYSKSSKLYMVLRLFDEMKKRRITPDRKVYNAVIYALAKVGLVIEAVNLVGTMEDNNVTPDVVTYNSLIKPLCKARKIDEAKEIFDQMLKRSLSPTIQTFHAFFRILRTKEEVFELLDKMRELRCYPITETYIMLIRKFCRWRQLDDVFKLWDVMREDGISHDRSSYIVLIHGLFLNGKLEEAYNYYTDMQEKGFLPEPKTEKMLQAWVSGRQVTETQATDLEHNQLEQDTLRKKVKAVPSKFDREKAFLRQPETRRVTRERGFSFWEQ* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1494 599 Gene3D Tetratricopeptide repeat domain 302 405 IPR011990 GO:0005515
Apr4g1494 599 Gene3D Tetratricopeptide repeat domain 129 301 IPR011990 GO:0005515
Apr4g1494 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Apr4g1494 599 PANTHER OS01G0816000 PROTEIN 53 589 - -
Apr4g1494 599 Gene3D Tetratricopeptide repeat domain 406 578 IPR011990 GO:0005515
Apr4g1494 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 320 IPR002885 -
Apr4g1494 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
Apr4g1494 599 Pfam PPR repeat family 390 434 IPR002885 -
Apr4g1494 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Apr4g1494 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
Apr4g1494 599 TIGRFAM PPR: pentatricopeptide repeat domain 359 392 IPR002885 -
Apr4g1494 599 TIGRFAM PPR: pentatricopeptide repeat domain 393 426 IPR002885 -
Apr4g1494 599 TIGRFAM PPR: pentatricopeptide repeat domain 323 356 IPR002885 -
Apr4g1494 599 TIGRFAM PPR: pentatricopeptide repeat domain 461 493 IPR002885 -
Apr4g1494 599 TIGRFAM PPR: pentatricopeptide repeat domain 496 527 IPR002885 -
Apr4g1494 599 TIGRFAM PPR: pentatricopeptide repeat domain 182 209 IPR002885 -
Apr4g1494 599 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 53 589 - -
Apr4g1494 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Apr4g1494 599 Pfam PPR repeat 182 206 IPR002885 -
Apr4g1494 599 Pfam PPR repeat 496 525 IPR002885 -
Apr4g1494 599 Pfam PPR repeat 461 490 IPR002885 -
Apr4g1494 599 Pfam Pentatricopeptide repeat domain 308 366 IPR002885 -
Apr4g1494 599 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 458 492 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1494 Apr-Chr4 15591409 15603972 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1494 175 548 Glycosyltransferase AT1G05670 22.917 4.94e-26 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1494 - - gmx:100785546 957.977