Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1484 ATGGGTGCGAGTCGAAAGCTTCAGGGAGAGATAGATCGTGTTCTGAAGAAAGTGCAGGAAGGTGTTGAAGTATTCGATAGCATCTGGAACAAGGTATACGACACGGACAATGCTAACCAGAAGGAGAAATTCGAAGCAGACCTCAAGAAGGAGATTAAGAAGCTCCAAAGATATAGAGATCAAATTAAGACTTGGATTCAGTCCAGTGAGATCAAGGACAAGAAGGCTCTGGTGGATGCACGCAAGCTAATTGAGCGAGAAATGGAAAGATTTAAGATATGTGAAAAGGAAACAAAGACCAAAGCATTCTCCAAAGAAGGCTTAGGTCAACAGCCAAAGACTGATCCAAAAGAGAAGGCTAAATCCGAGACAAGGGATTGGTTAAATAATGTGGTTGGAGAGTTAGAATCCCAGATAGATAACTTTGAAGCAGAGCTTGAAGGGCTTTCTGTTAAGAAAGGAAAAAGCAGGCCGCCCAGATTGACGCATCTGGAGACATCAATTACTCGGCACAAGGCACATATAAAAAAATGTGAATTCATTTTGAGGCTACTAGATAATGATGAATTGAGTCCTGAGCAGGTTAATGATGTTAAAGATTTCTTGGATGACTATGTCGAGCGTAATCAGGAGGATTTTGATGAATTCAGTGATGTTGATGAACTATACAGTTCATTACCTTTAGACAAGGTGGATACTCTAGAAGATCTTGTCACAATTCCCGCTGCTCTTTCTAAGGTGGCACCTGGTCTTAGCTTGAAGAGTTCTCCGGCACCATCAGCATCCGCATCAGCATCTGCATCACAATCATCTGATACTTATGTTCAAGAGCAAGCTGACGACACAGCATCCCTGGATAGTAATTCTGACATTGCTGCAAAGACTCCACCTTCTAAAAGTGTTGGAATTAGTTCTGCTCCTTCAACACCTGCTGGCAACCATGCTACTCCTGTTTCCGTGAATGTTTCTGGTCCTAATGTGCCCAGCGTACCTGCTGTTGCAGTTCTACCTGGGTCAAATTCTCTGCGGAATGTCGAAAATACTAATGTTACCAATTCATCTTCTGTAAATCCGTCTACCTCTACAAAGGATGAAGAGATTAATAGCTTCCCTAGCCGGAGACCATCTCCATCACTTTCTGATGCAACACTTGTGAGGGGCAGAAACGGCCTGTCAAATCAAGCAACAGCTAGCATTCCTCTTGGTTCTGGAAACATGGTTTCCACCAATGGGGGCCTTGGTTCAGTCCCTTTAGTCTCCGAAATAACCAAAAGGAACATGTTGGGAGCTGATGATAGACTTGGAAGTAGTGGGATGGTGCAGCCTCTTGTATCCCCGCTAAGTAATAGATTGATCTTGCCTCAAGCTGTGAAGGCTAATGATGGAACTGTTTCAGTTGACTCTAGTACTGTTAATGAAGCTGCAGCTGTATCTGGGAGAGTTTTCTCCCCTTCTGTGGTTCCTGGCATGCAATGGAGACCTGGAAGTCCCTTTCAGAATCAGAATGATGCAGGCCAGCTTCGTGGAAGAACTGAAATAGCTCCTGATCAAAGGGAAAAATTTCTGCAGAAGTATCAGCAAGTGCAACAAGGGCACAGCACCCTTCTTAATATGCCTTCTCTTGTTGGGGGAAATCATAAGCAGTTTTCTTCCCAGCAGCAAAATCCCCTTTTACAGCAGTTTAACTCTCAAGGCTCATCTGTTTCTTCTCAATCTGGTATTGGACTTGGTGTCCAGTCCACAAATCTCAGTGGTATTTCTTCTGCCTCGCTACAGCAGCCCAATTCTGTCCATTCCTCATCTAGTCAGCAGCCATTGATGCCAGGTGTTCCTAAGGATGCAGATGTTGGCAATTCTAAGATTGAAGAGCAGCAGCAACATCAGAATTTTCCTGATGAGTCAACAACCGAATCTACTGCTAGCACTGGGACTGTAAAGAATCTCATAAATGAAGATGATTCAAAATCAACATATGCTGTAGATTTTCCCGCAGGAGTATCTGCCTCTCTTCCAGAATCTGCTCAAACTTCCAGGGATATTGATTTGTCTCCTGGTCAACCCTTGCAATCCAATCAAGCTACTGGTAACCTTGGTGTCATTGGAAGAAGAAATGGTCCTGAACTTGGGGCGATTGGTGATAATTTTAGTGGATCAAGTGTTTCTTCTGGTGGAGTGCGTGATCAATTTTTTAATTTGCAAATGCTTGAGGCAGCCCACTTCAAAATTCCACAATCTAAAGACTCTGAACGTCCCAGGACTTATACCCCTAGGCATCCAGCAATTACACCTCCTAGCTATCCCCAAGTACAGGCACCAATTGTTAATAATCCTGCCTTTTGGGAGAGATTAGGTCTTGAACCATTTGGCACCGATACTATGTTCTTTGCATTTTATTATCAACAGAATACATACCAACAGTATTTGGCTGCAAAGGAGCTAAAAAAGCAGTCTTGGAGATACCACCGAAAGTATAACACATGGTTTCAGCGGCACGAAGAGCCCAAAGTTGCTACAGATGAATATGAGCAGGGAACATATGTGTACTTTGATTTTCATATTGCAAACGATGACATGCAACATGGATGGTGTCAAAGAATCAAGACTGAATTCACTTTTGAGTATAATTATCTTGAAGATGAAGTTCTTTCATAG 2652 0.4299 MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNVVGELESQIDNFEAELEGLSVKKGKSRPPRLTHLETSITRHKAHIKKCEFILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVDELYSSLPLDKVDTLEDLVTIPAALSKVAPGLSLKSSPAPSASASASASQSSDTYVQEQADDTASLDSNSDIAAKTPPSKSVGISSAPSTPAGNHATPVSVNVSGPNVPSVPAVAVLPGSNSLRNVENTNVTNSSSVNPSTSTKDEEINSFPSRRPSPSLSDATLVRGRNGLSNQATASIPLGSGNMVSTNGGLGSVPLVSEITKRNMLGADDRLGSSGMVQPLVSPLSNRLILPQAVKANDGTVSVDSSTVNEAAAVSGRVFSPSVVPGMQWRPGSPFQNQNDAGQLRGRTEIAPDQREKFLQKYQQVQQGHSTLLNMPSLVGGNHKQFSSQQQNPLLQQFNSQGSSVSSQSGIGLGVQSTNLSGISSASLQQPNSVHSSSSQQPLMPGVPKDADVGNSKIEEQQQHQNFPDESTTESTASTGTVKNLINEDDSKSTYAVDFPAGVSASLPESAQTSRDIDLSPGQPLQSNQATGNLGVIGRRNGPELGAIGDNFSGSSVSSGGVRDQFFNLQMLEAAHFKIPQSKDSERPRTYTPRHPAITPPSYPQVQAPIVNNPAFWERLGLEPFGTDTMFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVATDEYEQGTYVYFDFHIANDDMQHGWCQRIKTEFTFEYNYLEDEVLS* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1484 883 Coils Coil 125 152 - -
Apr4g1484 883 Coils Coil 41 61 - -
Apr4g1484 883 MobiDBLite consensus disorder prediction 587 649 - -
Apr4g1484 883 MobiDBLite consensus disorder prediction 103 124 - -
Apr4g1484 883 MobiDBLite consensus disorder prediction 587 607 - -
Apr4g1484 883 Pfam Not1 N-terminal domain, CCR4-Not complex component 4 229 IPR007207 GO:0005634|GO:0006355
Apr4g1484 883 MobiDBLite consensus disorder prediction 250 322 - -
Apr4g1484 883 MobiDBLite consensus disorder prediction 669 697 - -
Apr4g1484 883 MobiDBLite consensus disorder prediction 621 649 - -
Apr4g1484 883 Gene3D - 724 878 IPR038635 -
Apr4g1484 883 Pfam NOT2 / NOT3 / NOT5 family 739 877 IPR007282 GO:0006355
Apr4g1484 883 PANTHER BNAA10G16600D PROTEIN 1 881 - -
Apr4g1484 883 MobiDBLite consensus disorder prediction 342 384 - -
Apr4g1484 883 PIRSF NOT_su_3_5 1 883 IPR012270 GO:0006355|GO:0030015
Apr4g1484 883 MobiDBLite consensus disorder prediction 255 322 - -
Apr4g1484 883 PANTHER CCR4 NOT-RELATED 1 881 IPR040168 GO:0030015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1484 Apr-Chr4 15350686 15362465 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1484 K12580 - gmx:100785965 1450.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1484 4 15350686 15362465 Apr4g1484 4 15350686 15362465 ECH