Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1470 ATGCAATCGCACCTTCTCGTGGGACCCATCTCCGTCGCACCCTATGGTGGCGCCCTCGATTCCAACGCCTTCCTCTCCGCCGCGCCTTCCACCTGGACCAACTCTTCTCGCCGCCGTATCCCACTCGTTGCAGCCTCCTCTTCCTCCTCCTCATCTGCTGCGGCCATCAACGATGGCCTGAACCACTACGCCGTGCTCGGTGTCACCCGCACCGCCACTGCCGCCGAGATCAAACGCGCATATCGCCTCCTTGCTCGCAAGTATCATCCTGATGTTAGCAAGGATCCACATGCTGCTGAATTGTTCAAGAGCATCCGTCATGCATATGAAGTACTATCGAATAAAGCAACGAGAAATAAGTATGATCAAGAACTTCAATTTGGTCACAAGCCGTACAGGGAAAAGTGGAGTTACAGCACTGAATTTGAGGATCAGGTAAGAGTCTATAGATGGGCCCACCTGAGGAAAAAAATGCATAGTGAAAGATACTGGGAGCATTACAATGTCAATGAGGGCCACTACAGCCGTGAAACAGATGCGGAGGAAGATGAAGGAAATTTAAATGAAGAGAGGGGTTCTTTTTTTGAAGTGCTTAGATCAGCATTCATGTCACTCTTCTTGTTTCAGACGTTAGGATCCCGACTCTCACTTACATATAGCAGTCTGACAGCATTGTTTGATAAGAAGTTAGACACTGGTTACAAAATTGGTTATGTAATAGCATGGATTTTAGGCGGGAGGGGAGGCATATTGCTAACATTGTGCTTGTCCTTTGCAAGTTGGGTTTGCGGGAAAACCAGTAGTAGTGTAGTTGCACTAGTTATGGTGGCCATGTGGATTGGCTCCTACCTTGCTAGGTACGCACCACTTCCCCAAGGTGCTCTATTAGCGCTTCTCTACATGTCCATTAAGCTACAGTCTGACCTAATTTAA 933 0.4823 MQSHLLVGPISVAPYGGALDSNAFLSAAPSTWTNSSRRRIPLVAASSSSSSSAAAINDGLNHYAVLGVTRTATAAEIKRAYRLLARKYHPDVSKDPHAAELFKSIRHAYEVLSNKATRNKYDQELQFGHKPYREKWSYSTEFEDQVRVYRWAHLRKKMHSERYWEHYNVNEGHYSRETDAEEDEGNLNEERGSFFEVLRSAFMSLFLFQTLGSRLSLTYSSLTALFDKKLDTGYKIGYVIAWILGGRGGILLTLCLSFASWVCGKTSSSVVALVMVAMWIGSYLARYAPLPQGALLALLYMSIKLQSDLI* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1470 310 ProSiteProfiles dnaJ domain profile. 61 125 IPR001623 -
Apr4g1470 310 ProSitePatterns Nt-dnaJ domain signature. 102 121 IPR018253 -
Apr4g1470 310 Gene3D DnaJ domain 44 143 IPR036869 -
Apr4g1470 310 SMART dnaj_3 60 117 IPR001623 -
Apr4g1470 310 Pfam DnaJ domain 61 122 IPR001623 -
Apr4g1470 310 SUPERFAMILY Chaperone J-domain 59 132 IPR036869 -
Apr4g1470 310 CDD DnaJ 61 114 IPR001623 -
Apr4g1470 310 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 28 296 - -
Apr4g1470 310 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 28 296 - -
Apr4g1470 310 PRINTS DnaJ domain signature 63 81 IPR001623 -
Apr4g1470 310 PRINTS DnaJ domain signature 81 96 IPR001623 -
Apr4g1470 310 PRINTS DnaJ domain signature 97 117 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1470 Apr-Chr4 15174906 15180258 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1470 27 126 Miscellaneous Gene Families AT1G79030 38.679 2.79e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1470 - - gmx:100791619 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1470 4 15174906 15180258 Apr4g1470 4 15174906 15180258 ECH