Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1447 ATGGAAGTGGCTATTTCTCCACAAGCACAAAAGCAGAATTTGCAGACAACAGGTCGCAAAATTTTATGTTCTGGATCCCAAAAGGATCTGTGGCTTGTTGTGCGAGAAGGATCTCTAAATGACGTAGAGTTGGCCTTGGCATTGTTGAAGAAGAGTGGAGGCAATATCAATTTGAGGAACACCTTTGGCCTGACTCCTCTTCATATTGCAACTTGGAGAAACCACATTCCCATAGTAAGGAGGCTTCTTGCTGCTGGTGCAGATCCTGATGCTCGAGATGGAGAATCGGGATGGAGTAGCCTTCACAGGGCTCTGCATTTTGGTCATCTTGCTGTGGGAAGCGTCCTTCTTCAACATGGTGCCTCCATTACATTGGAGGACTCTAAATCTCGATTACCTGTAGATCACTTATCTGGCTCTGTATGTCAAGTTTTTGGAAATGAAAACCGTTCAGTGGCTACTGAGGTTTTTAGTTGGGGGAGTGGTGCAAATTATCAACTTGGAACTGGAAATGCGCATATTCAAAAGTTACCATGCAAAGTTGATTCACTTAGTGGTTCATTCATAAAGCTCATTTCTGCGGGGAAGTTCCATAGTGTGGCACTTACGGCTCTTGGAGAAGTGTATACTTGGGGATTTGGAAGGGGGGGCCGTTTGGGGCATCCTGATTTTGATATACACAGTGGTCAAGCTGCTGTCATCACTCCCCGCCAGGTGACTTCTGGTCTGGGTTCCCGCAGAGTGATGGCAATTGCTGCAGCTAAGCATCATACAGTTATTGCAACTCAGGGTGGGGAAGTTTTCACTTGGGGATCCAATAGAGAGGGACAGCTTGGGTACACTTCTGTTGATACACAACCCACACCTCGTAGAGTATCTTCATTGAGGTCAAAAATTGTTGCTGTTGCTGCAGCAAACAAGCACACTGCTGTAGTTTCTGATTTAGGTGAAGTTTTTACTTGGGGTTGCAACAGGGAGGGTCAGCTTGGTTATGGTACCTCAAACTCAGCATCTAATTACACCCCACATGTGGTTGAATCCTTGAAGGGAAAGACTTTAACCAGGGTTTCTGCTGCAAAATATCACACAATTGTATTAGGATCTGATGGAGAGGTATTTACCTGGGGTCATCGACTTGTTACACCAAAACGTGTAGTAATTACTAGGAACTTAAAGAAAAGTGGAAGCATTCCTTTAAAATTTCACCGCAAGGAACGGCTTAATGTGGTTTCTATAGCTGCTGGAATGGTACATAGCATGGCTCTTACAGATGATGGTGCATTATTTTATTGGGTCTCCTCAGATCCCGATCTTAGATGCCAACAGTTATACGCTATGTGTGGAAGAAATATGGTGAGTATATCAGCTGGAAAGTACTGGACTGCAGCAGTTACAGCTACAGGTGATGTTTACATGTGGGATGGGAAGAAAGGTAAGGACAAGCCACTTGTTGCAACTCGGTTGCATGGGGTAAAGAAGGCTACTTCAGTTTCGGTTGGTGAAACACATTTACTAATTGTGGCCTCCCTCTATCATCCTGTCTACCCTCCCAACATGATTGAGAATTCTCAAAATCTCAAGTTGAATAACAGGGATGATATGGAAGAGTTACATGAAGGCATTTTATTTGAGGATCTGGATTCCAGTAATATGATATCTAGTGTACAAAATGATTCTTTCAGGCAGAGATCTACTCCCAGCTTAAAAAGCCTTTGTGAAAAAGTAGCTGCAGAGTGTCTAGTGGAGCCAAGGAATGCCATTCAACTGCTTGAGATTGCGGATTCTCTCGGAGCAGATGATTTGAAGAAGTACTGCGAGGAGATTGTCATGCGCAACCTTGACTATATATTTACAGTTTCATCACATGCTGTAGCAAGTGCCTCACCAGATATTCTGGCTAACCTTGAGAGGTTGTTAGACCAAAGGTCATCTGAGCCATGGAGTCACCGTCGGCTCCCTAGTCCAACTGCTACTTTCCCTGCCATCATTAACAGCGAAGAAGATGATAGTGAGATGGAGTTTCAAAGGACTCGTGACAAACCAATGAAAATGTCAGCGGTGAAACTGGAGAAAACCCGAAGACTAGATTCCTTCCTACAGCCCAAGGATGATCCCAATAAACAAATTTCCAAAGTAGTTCGAGCTATACGGAAGAAGTTGCAGCAGATTGAGATGCTTGAAGCAAAGCAGTCTAATGGACATCTTCTTGATAACCAGCAGATTGCAAAGCTTCAATCTAAGTCAGTACTTGAGACCTCACTTGCAGAGCTAGGCATTCCTGTTGAAACATCAGTGAGTAAAGAATTGTCTTCTATGCTACCAGAAGGGAGAGGTAGTAAGAAGGGTAAACTATCAAAAAAACAAAGGAGAAAGAGCAACAAAACAACCATAGAGCAGACAGAAATGGAATCTGGTTACACTAAAAGTGAAGTCAATACCAAATCTGAGGACCTTTTGGACATTGACATTATGGTGGTTCCTGATTTGAAGGTGGAAGGGGATGCTCTGTTTGAACAAACCACAGCAGACCACGCTGCAAAAGAATTAACTTTAGTTGTGCAGAAGAAAGATGCTTTGGAGTTGCTGAAAGATAAGGGTCAGTCACCAAGAGTTTCTAAGAAGAAGAGCAAGAAGGGTGGGCTTTCTATGTTTCTGAGTGGTGCTCTTGATGAGGCCCCAAAAGAGGTGACTCCCCCTCCGCCACCACCGAGAAGTGATGGTCCTGCATGGGGCGGGGCCAAGTTCATCAAGGGATCTTCTTCTCTTCGTGAAATCCAGGATGAACAGAGCAAAGTAAAGGTAAATAAGCCAGCTGGAAGCAAGGAAAAGGCGGAGGATCTTTCTGATGTTGGCAGTGGGGGGAAAATAAAGTTGAGTTCATTTCTTCCTTCCAGCCCAATACCTGTTACTGCAACTCATTGTTCCCAAGCATCTGATGTTGAAGTAAGCACCCCTCCTTGGGCTGCTTCAGGAACCCCTCCCCAACTCTCTCGTCCATCTTTAAGGGACATCCAAATGCAACAGGGAAAGAAACTACAAAGCCTTTCATTTAGTCCAAAGACTAGGACAGCTGGATTTTCTGTTGCCAGTGGTCAAGGCTCACCATCTGAAACAACTGGGGTGAGCCGCTGGTTCAAGCCTGAAGTGGAAACACCATCCTCGATTCGATCTATTCAAATTGAGGAAAAGGCTATGAAAGATCTCAAGCGCTTCTATAGCAGTGTCAAGATTGTCAGAAAGCAATCTTAA 3249 0.4429 MEVAISPQAQKQNLQTTGRKILCSGSQKDLWLVVREGSLNDVELALALLKKSGGNINLRNTFGLTPLHIATWRNHIPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVGSVLLQHGASITLEDSKSRLPVDHLSGSVCQVFGNENRSVATEVFSWGSGANYQLGTGNAHIQKLPCKVDSLSGSFIKLISAGKFHSVALTALGEVYTWGFGRGGRLGHPDFDIHSGQAAVITPRQVTSGLGSRRVMAIAAAKHHTVIATQGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLRSKIVAVAAANKHTAVVSDLGEVFTWGCNREGQLGYGTSNSASNYTPHVVESLKGKTLTRVSAAKYHTIVLGSDGEVFTWGHRLVTPKRVVITRNLKKSGSIPLKFHRKERLNVVSIAAGMVHSMALTDDGALFYWVSSDPDLRCQQLYAMCGRNMVSISAGKYWTAAVTATGDVYMWDGKKGKDKPLVATRLHGVKKATSVSVGETHLLIVASLYHPVYPPNMIENSQNLKLNNRDDMEELHEGILFEDLDSSNMISSVQNDSFRQRSTPSLKSLCEKVAAECLVEPRNAIQLLEIADSLGADDLKKYCEEIVMRNLDYIFTVSSHAVASASPDILANLERLLDQRSSEPWSHRRLPSPTATFPAIINSEEDDSEMEFQRTRDKPMKMSAVKLEKTRRLDSFLQPKDDPNKQISKVVRAIRKKLQQIEMLEAKQSNGHLLDNQQIAKLQSKSVLETSLAELGIPVETSVSKELSSMLPEGRGSKKGKLSKKQRRKSNKTTIEQTEMESGYTKSEVNTKSEDLLDIDIMVVPDLKVEGDALFEQTTADHAAKELTLVVQKKDALELLKDKGQSPRVSKKKSKKGGLSMFLSGALDEAPKEVTPPPPPPRSDGPAWGGAKFIKGSSSLREIQDEQSKVKVNKPAGSKEKAEDLSDVGSGGKIKLSSFLPSSPIPVTATHCSQASDVEVSTPPWAASGTPPQLSRPSLRDIQMQQGKKLQSLSFSPKTRTAGFSVASGQGSPSETTGVSRWFKPEVETPSSIRSIQIEEKAMKDLKRFYSSVKIVRKQS* 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1447 1082 Gene3D - 6 121 IPR036770 -
Apr4g1447 1082 MobiDBLite consensus disorder prediction 1005 1045 - -
Apr4g1447 1082 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 1081 - -
Apr4g1447 1082 ProSiteProfiles Ankyrin repeat region circular profile. 96 127 - -
Apr4g1447 1082 PRINTS Chromosome condensation regulator RCC1 signature 155 171 IPR000408 -
Apr4g1447 1082 PRINTS Chromosome condensation regulator RCC1 signature 189 202 IPR000408 -
Apr4g1447 1082 PRINTS Chromosome condensation regulator RCC1 signature 208 224 IPR000408 -
Apr4g1447 1082 PRINTS Chromosome condensation regulator RCC1 signature 265 281 IPR000408 -
Apr4g1447 1082 PRINTS Chromosome condensation regulator RCC1 signature 302 318 IPR000408 -
Apr4g1447 1082 PRINTS Chromosome condensation regulator RCC1 signature 318 332 IPR000408 -
Apr4g1447 1082 PRINTS Chromosome condensation regulator RCC1 signature 415 433 IPR000408 -
Apr4g1447 1082 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 206 264 IPR000408 -
Apr4g1447 1082 PANTHER ANKYRIN REPEAT FAMILY PROTEIN / REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 1 1081 - -
Apr4g1447 1082 Gene3D - 389 514 IPR009091 -
Apr4g1447 1082 SUPERFAMILY RCC1/BLIP-II 119 431 IPR009091 -
Apr4g1447 1082 ProSiteProfiles Ankyrin repeat profile. 96 128 IPR002110 GO:0005515
Apr4g1447 1082 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 370 425 IPR000408 -
Apr4g1447 1082 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 154 205 IPR000408 -
Apr4g1447 1082 MobiDBLite consensus disorder prediction 1005 1041 - -
Apr4g1447 1082 ProSiteProfiles Ankyrin repeat profile. 62 94 IPR002110 GO:0005515
Apr4g1447 1082 Gene3D - 122 388 IPR009091 -
Apr4g1447 1082 ProSiteProfiles Ankyrin repeat region circular profile. 62 93 - -
Apr4g1447 1082 Coils Coil 709 729 - -
Apr4g1447 1082 MobiDBLite consensus disorder prediction 768 811 - -
Apr4g1447 1082 CDD BACK 583 617 - -
Apr4g1447 1082 SMART ANK_2a 96 125 IPR002110 GO:0005515
Apr4g1447 1082 SMART ANK_2a 25 58 IPR002110 GO:0005515
Apr4g1447 1082 SMART ANK_2a 62 91 IPR002110 GO:0005515
Apr4g1447 1082 SUPERFAMILY Ankyrin repeat 39 136 IPR036770 -
Apr4g1447 1082 Pfam Regulator of chromosome condensation (RCC1) repeat 206 260 IPR000408 -
Apr4g1447 1082 Pfam Regulator of chromosome condensation (RCC1) repeat 265 312 IPR000408 -
Apr4g1447 1082 Pfam Regulator of chromosome condensation (RCC1) repeat 155 202 IPR000408 -
Apr4g1447 1082 Pfam Regulator of chromosome condensation (RCC1) repeat 316 366 IPR000408 -
Apr4g1447 1082 Pfam Ankyrin repeats (3 copies) 41 127 IPR002110 GO:0005515
Apr4g1447 1082 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 265 315 IPR000408 -
Apr4g1447 1082 MobiDBLite consensus disorder prediction 924 950 - -
Apr4g1447 1082 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 192 202 IPR000408 -
Apr4g1447 1082 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 316 369 IPR000408 -
Apr4g1447 1082 MobiDBLite consensus disorder prediction 886 957 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1447 Apr-Chr4 14816695 14826170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1447 35 135 Acyl Lipid Metabolism Gene Families AT5G53470 33.981 3.56e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1447 K24810 - gmx:100800604 1874.75