Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1434 ATGGAATTCGATCATTACCTCTCGGAGCTTTCCGCTTCCTCGCCATGCATTCCCTCCGGCGAGGACTTCCATTTCTATTACAAATTCGGCGAATTCCGACGCCCGATCGAAGAAATCGCGAGGAGGACGCACTCGATGCTCGACACAATCGGCGCTGCCGAGCATATATGGGGCAGAGGCACGACATTTCCCAGTGACATCGATGACGCGTACGAATGGCTCGTGAATGCGAACGAAGACGTTTTGGAGCTGGTTGAGGAGTTGGTGGATGAGTTGCGGAAGGTTGCGAAGGTGGAGGAAGAGGATTGTGAAAACGGGTTCGGGTCGGGTTGTGTGAAGAGGAGAAAGGAGTTCATTGACCCGGTGAATAGAGTTGATAGCGAGATGTTGGGGGCGAAGCCTAAGGTACCGTTTCATATACCAACGATTACGAAGCCGCAGTATGCACACAACATTGTGGTTAATAATGCAAGCCAGCCTTTTCAGCATGTTGGGTTGGAGAAGAGTGATGATGGTCAGAGGTTTATTCATCCACTGGAGAAACTCTCTTTTTTGGATTTTGTTGATAAAGTAAATCTTGAGAATCTTGAGCCAGTAAAGCCTTCCACAATAGAGTGCACCCCTTTCAAGCTTGTGGAGGATGTCAAAGGACTGAAGGAGTTGGCTGCTAAGCTGTCTTCTGTTAATGAATTTGCTGTGGATTTGGAACATAATCAATATCGGTCTTTCCAAGGTTTGACATGCTTGATGCAAATTTCAACCAGGACTGAAGATTTTGTAATAGATACTCTGAAACTCCATGTTCATGTTGGGCCGTACCTGAGGGAAGTCTTCAAGGATCCTACCAAGAAGAAGGTCATGCATGGAGCAGATCGAGACATTATATGGCTTCAGCGGGATTTTGGCATTTATGTTTGTAATTTGTTTGATACTGGCCAGGCCTCAAGAGTGTTAAAATTGGGGAGATATAGTCTGCAATATCTTTTGCTGCACTTTTGTGGTGTTGCGGCAAACAAGGAATACCAAAATGCAGATTGGAGAATCCGCCCTCTTCCTGATGTGATGCTAAGATATGGCCGTGAAGATACACACTATCTGCTTTATATATATGATTTAGTGAGGATCAAATTATTTACATTGTCTAAGGAATCTGAAGGTTCTGATAATCCTCTAGTGGAGGTTTACAAGCGCAGTTATGATATATGCATGCAACTATATGAGAAAGAGCTTCTGACAGAAAACTCATACCTTCAAATATATGGGTTGCGAGGGGCTGGTTTCAATGCTCAGCAGCTTGCTGTTGTTTCAGGGCTTTTTGAATGGCGTGACATTCTTGCTCGTGCAGAGGACGAAAGTCCTGGCTATGTATTGCCAAATAAAATTATTCTTGAGATTGCTAAGCAGATGCCAGTCATTACAAGCAATCTACGGCGATTGGTGGGGAAGTCAAAGCTCCCATATGTTGAGCGCAGCCTTGATATCATTGTCAACATTGTCAGACGTTCTATGCAAAATGGTGCTGCCTTTGAAGAAGCTGCACTACGTTTGAAAGAAGAACATGCGGCAAGTATTATATCTTCCCATTCCATTTTGGGCAACAGTGAGAAGTCAAAACATGCTGTAGAAATTCCAAGTGTAGCATATGAAACATCAGATCCACAGAAACCTGTTTCAGGTTTAGTTTCCACCTCCACCCCAGTTGGGACTGTAACGGTAGATACCGAATCTGATTTGGAGGACATGGTACAGAGTAACCTAGAAAGATCCAACTATCGCCAAGGGGAAAATTCTGTTGTGTCCAGTGTCCACCAGCGGAAAAGAGGGTGA 1827 0.4455 MEFDHYLSELSASSPCIPSGEDFHFYYKFGEFRRPIEEIARRTHSMLDTIGAAEHIWGRGTTFPSDIDDAYEWLVNANEDVLELVEELVDELRKVAKVEEEDCENGFGSGCVKRRKEFIDPVNRVDSEMLGAKPKVPFHIPTITKPQYAHNIVVNNASQPFQHVGLEKSDDGQRFIHPLEKLSFLDFVDKVNLENLEPVKPSTIECTPFKLVEDVKGLKELAAKLSSVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVIDTLKLHVHVGPYLREVFKDPTKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLKLGRYSLQYLLLHFCGVAANKEYQNADWRIRPLPDVMLRYGREDTHYLLYIYDLVRIKLFTLSKESEGSDNPLVEVYKRSYDICMQLYEKELLTENSYLQIYGLRGAGFNAQQLAVVSGLFEWRDILARAEDESPGYVLPNKIILEIAKQMPVITSNLRRLVGKSKLPYVERSLDIIVNIVRRSMQNGAAFEEAALRLKEEHAASIISSHSILGNSEKSKHAVEIPSVAYETSDPQKPVSGLVSTSTPVGTVTVDTESDLEDMVQSNLERSNYRQGENSVVSSVHQRKRG* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1434 608 SMART hrdc7 428 508 IPR002121 GO:0003676
Apr4g1434 608 SMART 35exoneu6 209 378 IPR002562 GO:0003676|GO:0006139|GO:0008408
Apr4g1434 608 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 1 524 IPR045092 GO:0000175|GO:0000467
Apr4g1434 608 MobiDBLite consensus disorder prediction 551 601 - -
Apr4g1434 608 Coils Coil 81 102 - -
Apr4g1434 608 MobiDBLite consensus disorder prediction 551 608 - -
Apr4g1434 608 Pfam HRDC domain 431 484 IPR002121 GO:0003676
Apr4g1434 608 PANTHER 3'-5' EXONUCLEASE 1 524 - -
Apr4g1434 608 CDD Rrp6p_like_exo 205 397 - -
Apr4g1434 608 ProSiteProfiles HRDC domain profile. 428 509 IPR002121 GO:0003676
Apr4g1434 608 SUPERFAMILY HRDC-like 411 506 IPR010997 GO:0000166|GO:0044237
Apr4g1434 608 SUPERFAMILY Ribonuclease H-like 143 407 IPR012337 -
Apr4g1434 608 Pfam 3'-5' exonuclease 211 371 IPR002562 GO:0003676|GO:0006139|GO:0008408
Apr4g1434 608 Gene3D HRDC domain 417 509 IPR044876 -
Apr4g1434 608 Gene3D - 137 416 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1434 Apr-Chr4 14639266 14654178 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1434 K12591 - gmx:100804872 820.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1434 4 14639266 14654178 Apr4g1434 4 14639266 14654178 ECH