Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1423 ATGCTAGTATGTCCTAGCAGCTCCCTCCATGGCCTCGCCACACTGCACCGCCATTCCCAACCCGCTCACTTCCTCCTCTCCAACCCTTTCCTCTTCCCTCCTTCCTCTCGCTTCGCCGCTTCTCGCAAATGCAGCTTCCCTTCTCTATTTTCCGGCAAGAACCGTCACCGCTTCCGCGTTAGAGTTTCCACCGATTCATCGGAGGTTTCGGAGTCCGTCGTCGGCGACGCTGCTGGCCCGCACATTCCGCTGCAACCTTATTCCGTGAAGATTCCTGTTGGTGATAGACATATTTTGGTTGAGACTGGTCATATAGGAAGACAAGCAAGTGGCTCTGTTACAGTTACGGACGGAGAGACTATTGTTTACACAACTGTTTGCTTGGATGATGTTCCCAGTGAACCATCTGATTTTTTCCCTCTTTCTGTTAATTATCAAGAGCGTTTTTCAGCAGCTGGTCGCACTAGTGGTGGTTTTTTTAAGCGAGAAGGAAAGGCAAAGGATCATGAGGTTCTTATTTGTAGATTGATTGATAGGCCTCTACGTCCTACAATGCCTAAGGGCTTCTATCATGAAACTCAAATATTATCTTGGGTTTTAAGCTATGATGGGTTGCACTCCCCTGATTCTTTGGCTGTCACTGCAGCTGGTATAGCAGTTGCACTTTCAGAAGTGCCCATGTCAAAAGCAGTTGCAGGAGTTCGTGTTGGTCTAGTTGGTGATAAGTATATAGTAAATCCTACAACTGAGGAGATGGAAAACTCAGAGTTGGACCTCTTGCTTGCTGGCACAGATAGTGCAGTATTGATGATAGAGGGTTATAGCAATTTTCTTCCAGAAGAGAAGTTACTTAAAGCCGTAGAAGTTGGTCAGGATGCAGTGCGAGCAATCTGTAATGAAGTAGAGACTTTGGTTAAGAAGTGTGGGAAACCGAAGATGTTGGATGCCATCATGTTGCCTCCTCCTGAGCTTTATAAACATGTTGAAGAAATTGCTGGTGATGAGTTGGTGAAGGTTCTTCAAATTAGAAACAAAATACCAAGAAGGAAAGCCCTTTCATCATTAGAAGACAAGGTTCTGAAGATACTTACAGAAAACGGGTTTGTTACAAATGATTCAACACTGAGGAGTAATTCTGAAACCATTGCGGAGATTCTTGAGGAGGAGGATGAAGATGAGGAAGTAATTGTTGATGGGGAAGTTGACGAAGGTGATGTTCATATAAAGCCAACACCACGCAAACCAGCCCCTTTAGTAAGTACTATACTTTTTTTAGAGGTAGATGTGAAGTTGGTATTTAAAGAAGTTACGTCCAAGTTTTTGAGGAAGCGCATAGTAGAGGGTGGGAAAAGGAGTGATGGGCGAACACCAGAAGGAATACGCCCAATCAACTCTAGATGTGGCCTATTACCTAGGGCTCATGGAAGTACTCTCTTTACAAGAGGCGAGACGCAGTCCCTAGCAGTTGTTACCCTTGGAGATAAACAAATGGCGCAAAGAATAGACAATCTTGACGGTGTTGATGAATTCAAGAGGTTCTATCTGCAGTATTCATTTCCTCCTTCATGTGTTGGGGAAGTTGGCCGGATTGGTGCCCCAAGTAGAAGAGAAATTGGTCATGGGATGCTCGCTGAGAGATCCCTTGAACCAATTTTACCTTCCGAAGATGATTTCCCTTACACCATACGTGTTGAGAGTACTATCACAGAAAGTAATGGCTCTTCAAGCATGGCTTCTGTTTGTGGTGGCTGCTTAGCATTACAAGATGCTGGGGTTCCTATTAAGTGCCCAATTGCTGGAATTGCGATGGGTATGGTACTGGACACCAAGGAATTTGGTGGAGATGGAACTCCGCTCATTCTGTCTGACATAACTGGATCAGAAGATGCATCTGGAGATATGGATTTTAAGGTTGCTGGAACTGAAGAAGGCGTAACTGCATTCCAAATGGACATCAAGGTGGGTGGAATTACTTTGCCCATCATGAGAAAGGCACTCCTACAAGCACGAGATGGCAGGAAGCATATACTTGGAGCGATGATGAATTCCTCGCCCCCTCCAACCAAAAGACTTTCCAAGCATGCTCCTTTGATTCATGTTATGAAGGTCAAACCTGATAGGATAAATCTTATAATTGGTTCTGGTGGGAAAAAAGTGAAGAGCATTATTGAGGAATGTGGTGTAGAAGCCATCGATACAGAAGATAATGGCACTGTGAAAATATTTGCAAAAGATTTGTCTAGTTTAGAGAGGTCTAAAGCTATTATTAGTAATTTGACGATGGTTCCAACAATTGGTGATATATATAGGAACTGTGAAATCAAATCAATAGCACCATATGGAGTTTTTGTAGAGATAGCACCTGGACGAGAGGGACTTTGTCATATCAGTGAATTGAGTTCAGGTTGGCTACCCAAGGCAGAAGATGTTTTCAAAGTGGGAGATCGTATTGATGTAAAGCTTATAGAGATAAATGATAAGGGGCAGCTGCGCCTTAGTCACCGAGCTCTTCTTCCAGATACGGATCCAGACAGCTCAAATGCTAAACAGTCTACTGGCAAACTCACTGAGGATGGTTTAGCGGAAGAGAAGGTTGAACAATCTAAGGATAAGTCTAGCACTCCCAAAGTTACAACCTCTTCTAAAAGGAGTTCAGAGGACGATTCTTTACTTCCATCAAAAAAGTTTGTCAGGAGATTGGTAAACTCATCCCAGGATAAGCCTTTCACTAACAAAGACAAGACAAAGAAGAGTAACAACAAAACAGTTGGTAGTGTCTCCAGCAAAGATGAAAATAGTTTGGTTAGTGGAGAGGCATAA 2820 0.4351 MLVCPSSSLHGLATLHRHSQPAHFLLSNPFLFPPSSRFAASRKCSFPSLFSGKNRHRFRVRVSTDSSEVSESVVGDAAGPHIPLQPYSVKIPVGDRHILVETGHIGRQASGSVTVTDGETIVYTTVCLDDVPSEPSDFFPLSVNYQERFSAAGRTSGGFFKREGKAKDHEVLICRLIDRPLRPTMPKGFYHETQILSWVLSYDGLHSPDSLAVTAAGIAVALSEVPMSKAVAGVRVGLVGDKYIVNPTTEEMENSELDLLLAGTDSAVLMIEGYSNFLPEEKLLKAVEVGQDAVRAICNEVETLVKKCGKPKMLDAIMLPPPELYKHVEEIAGDELVKVLQIRNKIPRRKALSSLEDKVLKILTENGFVTNDSTLRSNSETIAEILEEEDEDEEVIVDGEVDEGDVHIKPTPRKPAPLVSTILFLEVDVKLVFKEVTSKFLRKRIVEGGKRSDGRTPEGIRPINSRCGLLPRAHGSTLFTRGETQSLAVVTLGDKQMAQRIDNLDGVDEFKRFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLAERSLEPILPSEDDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCPIAGIAMGMVLDTKEFGGDGTPLILSDITGSEDASGDMDFKVAGTEEGVTAFQMDIKVGGITLPIMRKALLQARDGRKHILGAMMNSSPPPTKRLSKHAPLIHVMKVKPDRINLIIGSGGKKVKSIIEECGVEAIDTEDNGTVKIFAKDLSSLERSKAIISNLTMVPTIGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSGWLPKAEDVFKVGDRIDVKLIEINDKGQLRLSHRALLPDTDPDSSNAKQSTGKLTEDGLAEEKVEQSKDKSSTPKVTTSSKRSSEDDSLLPSKKFVRRLVNSSQDKPFTNKDKTKKSNNKTVGSVSSKDENSLVSGEA* 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1423 939 TIGRFAM polynuc_phos: polyribonucleotide nucleotidyltransferase 428 836 IPR012162 GO:0003723|GO:0004654|GO:0006402
Apr4g1423 939 Hamap Polyribonucleotide nucleotidyltransferase [pnp]. 85 838 IPR012162 GO:0003723|GO:0004654|GO:0006402
Apr4g1423 939 Pfam 3' exoribonuclease family, domain 2 230 292 IPR015847 -
Apr4g1423 939 SUPERFAMILY Ribonuclease PH domain 2-like 587 689 IPR036345 -
Apr4g1423 939 CDD PNPase_KH 696 756 - -
Apr4g1423 939 MobiDBLite consensus disorder prediction 836 939 - -
Apr4g1423 939 Pfam KH domain 700 756 IPR004088 GO:0003723
Apr4g1423 939 SMART kh_6 695 760 IPR004087 GO:0003676
Apr4g1423 939 SUPERFAMILY Ribosomal protein S5 domain 2-like 433 605 IPR020568 -
Apr4g1423 939 Gene3D - 420 692 IPR027408 -
Apr4g1423 939 SUPERFAMILY Ribosomal protein S5 domain 2-like 87 226 IPR020568 -
Apr4g1423 939 MobiDBLite consensus disorder prediction 856 871 - -
Apr4g1423 939 Gene3D - 766 837 IPR012340 -
Apr4g1423 939 CDD S1_PNPase 766 834 - -
Apr4g1423 939 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 73 907 IPR012162 GO:0003723|GO:0004654|GO:0006402
Apr4g1423 939 Pfam S1 RNA binding domain 773 835 IPR003029 GO:0003676
Apr4g1423 939 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 1, CHLOROPLASTIC 73 907 - -
Apr4g1423 939 CDD RNase_PH_PNPase_1 87 313 - -
Apr4g1423 939 Gene3D - 79 311 IPR027408 -
Apr4g1423 939 ProSiteProfiles S1 domain profile. 766 835 IPR003029 GO:0003676
Apr4g1423 939 SMART S1_6 764 835 IPR022967 -
Apr4g1423 939 Gene3D K Homology domain, type 1 693 765 IPR036612 GO:0003723
Apr4g1423 939 SUPERFAMILY Ribonuclease PH domain 2-like 228 313 IPR036345 -
Apr4g1423 939 Pfam 3' exoribonuclease family, domain 1 460 593 IPR001247 -
Apr4g1423 939 Pfam 3' exoribonuclease family, domain 1 96 226 IPR001247 -
Apr4g1423 939 ProSiteProfiles Type-1 KH domain profile. 696 756 - -
Apr4g1423 939 CDD RNase_PH_PNPase_2 460 687 - -
Apr4g1423 939 SUPERFAMILY Nucleic acid-binding proteins 761 840 IPR012340 -
Apr4g1423 939 MobiDBLite consensus disorder prediction 920 939 - -
Apr4g1423 939 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 691 760 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1423 Apr-Chr4 14354295 14400251 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1423 K00962 - gmx:100785430 1457.97