Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1417 ATGGAATTGGGAATGCATTTCAAAAGCAATAATAATAGCTTAGTCAACATGGCCATATTGAACAACCTTAATATCACCACACAACCACAGATCATCCAAGAACAAGTTCAGCAACAACGCAGGCTTCCATTCACAGACCCCATCAAGGCACAAGATTCAAGCTTTCCCAACAGAATAACAGTGGCGGCTCAAACAGCAAGAAGGGTCTTCCAAATTCTCTGCTACTTGCATTTGTTATATCTTATGGCACAAGATTCAAACTTCCCCAACAGAACAGTGGCGGCTCAAACAGCAAGAAGGGTCTTTGAAATTCTCTTCTACTTGCATTTGTTCCTAGTTGCAGTCTTTGTGATTTTCCTTACCATATATGGTCTTGTCTCCGACTCTCACACCCACCATTTTCACCCTCAGAAGTGGTACCCCCCACTTCTAGCATCAACTGCATGTGCTGGAATTGTTGGTTTCACATGGCAGTGGATCACGGCACGCCACCCCACAAGGGCTGTCAAGTTAGCATTTTGGCTGAGTCCTCTCCTAACATGTGCAATGGGAGTTCTGTTTGTGTGCATTGGCTCTGCAGTGAGTCTAGCAGCTGGTGTAATTGCTTTGGTTTCTGCATTAATTCAGTCCCTCTATGGTTGTTGGGTCAGGACCAGATTTGAATATGCCACCAAAGTCTTGTCAGTTTCAATAGCTTTTCCTCCTACTAAAACCAAGGAGTTAACACTTACATCAATCGTCATTGGTATCCTTTACTGCTGTTTCCTGGTGTCTGGGATAGGAGGAGCTAGGGCTATTGAAAGCAGAACCAAACTAGCGTCCTTTTTCATTTTGGTGATCTTGCTGAGCCTGGGATGGACTCTGCAGTTTCTGAAAAATGCAATGTATGTCACCATTTCAAGGGTCAAGTATATGCATTTTGCTGGAGGAGTTGACATGGACACTAGAGTGGCATTTGGTGACACAATCAAGTACTTAACTGGAAGTGTTTCCATAGGCTCCATCCTTGTCCCCCTTATTGGACTTTTCCGGGGTTTTGCACGATCCACGAGTTTGGTTGGAGGAGATACAGATGAGTTTATGTTTTCCTGTGTTAGTTGCTATATGGGGATTGCCTCTCTTCTTGTGACCTGTGGGAACAGATGGGGTTTTGTGCATGTTGGGGTATATAACAAGGGTTTTGTGCAGGCATCTTCTGATACTTGGGAGATGTTCATTAGAGTTGGATTGGAGCAACTGATAGACTTAGATCTCACTGGGGCTTTCTGTTTTCTTAGTGGGGTTGCAGCAGGTTCAATTTGTAGTCTAGTGAGTGGAATTTGGAGTCTCCTAATGCACAAGAACTATGCCATAGAAGTATCCATTTATGCTTTCCTCATTGGCTATTTCATGTGTCGGTTGGCTATTGCATGGCTACAAGCATGTGTTTCAGCTTACTACGTTGCTTATGCAGAAAATCCACAGAGCGCTCAATTTGACTCCACTATTCCAGTACGCTTGGAGCAGCTTAATAGATCTCAAGCTATGCAAATATTCAGAGCTAATAATTTCAGCCGAGCCTAA 1563 0.437 MELGMHFKSNNNSLVNMAILNNLNITTQPQIIQEQVQQQRRLPFTDPIKAQDSSFPNRITVAAQTARRVFQILCYLHLLYLMAQDSNFPNRTVAAQTARRVFEILFYLHLFLVAVFVIFLTIYGLVSDSHTHHFHPQKWYPPLLASTACAGIVGFTWQWITARHPTRAVKLAFWLSPLLTCAMGVLFVCIGSAVSLAAGVIALVSALIQSLYGCWVRTRFEYATKVLSVSIAFPPTKTKELTLTSIVIGILYCCFLVSGIGGARAIESRTKLASFFILVILLSLGWTLQFLKNAMYVTISRVKYMHFAGGVDMDTRVAFGDTIKYLTGSVSIGSILVPLIGLFRGFARSTSLVGGDTDEFMFSCVSCYMGIASLLVTCGNRWGFVHVGVYNKGFVQASSDTWEMFIRVGLEQLIDLDLTGAFCFLSGVAAGSICSLVSGIWSLLMHKNYAIEVSIYAFLIGYFMCRLAIAWLQACVSAYYVAYAENPQSAQFDSTIPVRLEQLNRSQAMQIFRANNFSRA* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1417 520 PANTHER F20H23.27 PROTEIN-RELATED 88 507 - -
Apr4g1417 520 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 88 507 IPR007603 GO:0022857|GO:0055085
Apr4g1417 520 Pfam Plasma-membrane choline transporter 200 487 IPR007603 GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1417 Apr-Chr4 14257974 14260140 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1417 - - aprc:113862224 1019.22